Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01080 ATGAGTGTGGTGGGGTTTGACATTGGTAATGAGAACTGTGTCATTGCTGTAGTTAGGCAACGTGGGGTTGATGTTTTGTTGAACTATGAATCCAAACGCGAAACTCCTGCTGTGGTCTGCTTTGGCGAGAAACAGCGGCTTTTGGGGTCTGCTGGAGCTGCCTCTGCTATGATGCACATCAAGTCCACAATATCTCAAATAAAGAGACTGATAGGGAGGACATTTGCGGATCCTGATGTGGAAAAAGAGCTGAAAATGCTCCCTGTTAAAACTTCTGAGGGCTCAGATGGTGGCATTTTGATTCACTTGAAATACTTGGGGGAGACTCATGTATTTACACCCGTTCAAATAATGTCCATGCTCTTTGCTCACTTGAAGACTATGACTGAAAAGGATTTGGAGATGCCCATTTCGGATTGCGTTATTGGGATCCCTTCGTACTTTACTGACTTGCAGCGACGGGCATATCTAGATGCAGCAAAAATTGCTGGGTTGAAGCCTTTGAGATTGATCCATGATTGCACTGCAACTGCCCTTAGTTATGGAATGTATAAAACAGATTTTGGCAGTGCAAGTCCAGTTTATGTTGCATTTATCGACATTGGTCACTGTGATACTCAGGTCTCCATTGCATCATTTGAGTTTGGGAAAATGAAGATACTTTCGCATGCATTTGACAGGAGCTTAGGGGGGAGGGACTTTGATGAGGTTCTATTTAGTCATTTTGCAGCAAAGTTCAAGGAAGAGTATCACATTGATGTGTACTCTAATGCCAAGGCATGCATTAGGCTACATGCAGCATGTGAGAAATTGAAGAAAGTTTTGAGCGCAAATCTAGAGGCACCTCTAAATATTGAATGCTTGATGGATGAGAAAGATGTTAAAGGCTTTATCACTAGAGAAGAATATGAGAAGCTGGCATCAGGATTATTGGAGAGAGTTTCCATTCCATGCAACAGAGCATTAACTGATGCAAACTTGACAGCAGAGAAAATTTCTTCAGTGGAGCTAGTAGGTTCATGTTCTAGGATTCCAGCTATACGTACATTACTAACTACTCTATTCAAGAGAGAACCCAGCCGACAGCTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTACAATGTGCAATGCTCAGTCCCGTTTACCGTGTTAGAGAATATGATGTCCAGGATACTCTTCCCTTTTCCATTGGACTTTCAATAGATGGATGCCCAATCGCTGCTGGATCAAAAGGTGTACTTTTCCCAAGAGGCCAACCTTTTCCAAGTGTTAAAGTCATAACCTTTCAGCGAAGTAGTTTGTTTCATTTGGAAGCTTTCTATGCTAATCCAGATGAACTTCCACCTGGGACATCTCCCAAAATTAGTTGTGTCACGATTGGTCCTTTCCATGGCTCCCATGGTAGTGAGACCAGAATTAAAGTTAAAGTTCCACTTAATCTGCATGGCATTGTCAGTATTGAATCAGCCACATTGATCAAGGATGACATAGATGATTCAGTTATGGAGGTGGATTCTCATTCAAATTCTGATCCAATGGATGTTGATCCCATTTCTGAGACAGAAGCTAATGGCTTTGAAGATAATACCAACAAGAAGTTTGAATCTCCATGTAGTTCTGCTGATGGTACAAGAAAAGATAAGGCTAACAGAAGGCTTGATGTGCCAGTGAATGAGGATATCTATGGTGGAATGACAAAGGCAGAGATCTCAGAAGCTCATGAAAAAGAACTCCAGTTGGCTCAACAGGACAGAATTGTAGAGCAAACCAAAGAAAAGAAGAATACCTTGGAGTCTTATGTATATGATATGAGGAGTAAGCTCTTCAACACATATCGGAACTTTGCAAGTGAGAAAGAGAGGGATGACATATCTAGGAGCCTTCAAGAGACTGAGGAATGGCTTTATGAGGATGGTGTTGATGAAACTGAACATGCTTATTCTTCAAAACTAGAAGATCTGAAAAAGCTGGTAGATCCAATTGTGAATAGGTACAAAGACGAAAAAGAAAGAGAGCAAGCTATAGAAGATTTATCAAAGTGCATTTTAAAGCACGTGTCTGCAGATTCCCTTACACCCAAGGATAAAGAACTGATCAAGAATGAGTGCAATAAAGTGGAGCAATGGATGAGAGAGAAGATCCAGCAACAAGAATCTTTTCCTAAGAATGCTGACCCAATATTATGGTCAAGTGATATTAAGAGCAAGACAGAGGAGTTAAACTTAATATGCCAACAGATAATGGAAGACAAAGACAAGCCGGATACTTCCAATGATCTATGA 2289 0.4115 MSVVGFDIGNENCVIAVVRQRGVDVLLNYESKRETPAVVCFGEKQRLLGSAGAASAMMHIKSTISQIKRLIGRTFADPDVEKELKMLPVKTSEGSDGGILIHLKYLGETHVFTPVQIMSMLFAHLKTMTEKDLEMPISDCVIGIPSYFTDLQRRAYLDAAKIAGLKPLRLIHDCTATALSYGMYKTDFGSASPVYVAFIDIGHCDTQVSIASFEFGKMKILSHAFDRSLGGRDFDEVLFSHFAAKFKEEYHIDVYSNAKACIRLHAACEKLKKVLSANLEAPLNIECLMDEKDVKGFITREEYEKLASGLLERVSIPCNRALTDANLTAEKISSVELVGSCSRIPAIRTLLTTLFKREPSRQLNASECVARGCALQCAMLSPVYRVREYDVQDTLPFSIGLSIDGCPIAAGSKGVLFPRGQPFPSVKVITFQRSSLFHLEAFYANPDELPPGTSPKISCVTIGPFHGSHGSETRIKVKVPLNLHGIVSIESATLIKDDIDDSVMEVDSHSNSDPMDVDPISETEANGFEDNTNKKFESPCSSADGTRKDKANRRLDVPVNEDIYGGMTKAEISEAHEKELQLAQQDRIVEQTKEKKNTLESYVYDMRSKLFNTYRNFASEKERDDISRSLQETEEWLYEDGVDETEHAYSSKLEDLKKLVDPIVNRYKDEKEREQAIEDLSKCILKHVSADSLTPKDKELIKNECNKVEQWMREKIQQQESFPKNADPILWSSDIKSKTEELNLICQQIMEDKDKPDTSNDL 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01080 762 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 600 IPR029047 -
Cca09g01080 762 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 756 - -
Cca09g01080 762 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 667 IPR029048 -
Cca09g01080 762 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Cca09g01080 762 CDD HSPA4_like_NDB 2 381 - -
Cca09g01080 762 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 563 IPR029047 -
Cca09g01080 762 MobiDBLite consensus disorder prediction 525 548 - -
Cca09g01080 762 Gene3D - 567 678 IPR029048 -
Cca09g01080 762 PRINTS 70kDa heat shock protein signature 2 15 - -
Cca09g01080 762 PRINTS 70kDa heat shock protein signature 30 42 - -
Cca09g01080 762 PRINTS 70kDa heat shock protein signature 140 160 - -
Cca09g01080 762 PRINTS 70kDa heat shock protein signature 332 348 - -
Cca09g01080 762 PRINTS 70kDa heat shock protein signature 363 383 - -
Cca09g01080 762 PRINTS 70kDa heat shock protein signature 388 407 - -
Cca09g01080 762 PRINTS 70kDa heat shock protein signature 472 488 - -
Cca09g01080 762 Gene3D - 186 360 - -
Cca09g01080 762 Gene3D - 38 113 - -
Cca09g01080 762 Pfam Hsp70 protein 3 667 IPR013126 GO:0005524|GO:0140662
Cca09g01080 762 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Cca09g01080 762 PANTHER HSC70CB, ISOFORM G-RELATED 1 756 - -
Cca09g01080 762 Gene3D - 5 374 - -
Cca09g01080 762 Gene3D Actin; Chain A, domain 4 230 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01080 Cca-Chr9 31764474 31771140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01080 2 664 Miscellaneous Gene Families AT5G28540 29.104 3.94e-77 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01080 K09489 - gmx:100808218 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01080 09 31764474 31771140 Cca09g01080 09 31764474 31771140 ECH