Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01076 ATGGGTTGCAGAAACAGAGACTCCTTCACAGAGGATCACACTTGTTCATCTTCTTCGCTCAGCGATGCCTTGCTTTTGACGACCATGTGCATCGTTGGCCTCCCTGTCGATGTTCACGTTAAGGATGGCTCTGTCTATTCTGGAATCTTCCACACTGCTTCTGTTCACGCCGATTACGGTATTGTTTTGAAGAAAGCAAGGATGACCAAGAAGGGAAAGGGCAACACCAATGTGGGAAATGAGGGCTTGGTGGACACGCTAGTGATTCTATCTGGTGATCTAGTGCAAGTTGTTGCTAAGGGAGTAATGCTTCCTGCAGATGGTGTTGGTGGAAACATAACTGGTGATGATGAGGAAGCAGTTGCACATAGTGTTTGTTCCGAGAGTAAAACATGTGAGGTAGAGAATCATACAGGGCCTTTAATGGATGCAAAACAGATTAATCAATCAAGACAAGCTGGAGACGATAAGTCAAACTCAAAAGGGAAAGCTGATGATTGCACACAGAAGTCTGGGTTTGTTAATGGAAAAATTGATGAAAAGATTCAAAGCCTCAATTCAAGCCATGAAGCTGATACTTGTCTAGGCCAAGAGGTGGCTGTTGAGCATGAAAGCACAGATAGCACATCAAGTCCTTTTGATAATGGATTATTCTGCAACAATGCTCCTGCATCTGTTAAAACTGATGATCGGTGTAGTGAAAGGTCTACTTCAGCAGAGTCTGTCTCGACAAATTCAACCCATGGTGTGGATCTCATCTCAGAGTCACAGCCAGCAAGGTCTGCTGAAATATCTGCTCCAAGGGTTACAGATTCTTCAAGAAATGCTAAGGAATTTAAGCTCAATCCAGCCGCCAAAACATTCTCTCCTTCTTTTACGAATCCTATGTCAGCAACTTCTGCTGCAAACATGGTATACATACCAAATAGCTCTCCTGTGGTACCTGTTGCTAGTATTCAACCAGAAGTTGGATTCAATACTTTTGCTTCCCGGCCATCAGTGCCTGTTAAGGTTGCACAGTATAATAATTTGACTGTGGGAAATGGTGGCAGTGGCTCTCAGTTTTCTCAACCTATTGTAGGACATGTGGCACATAGAACCCAACCTCTACGGTATGCAACACATTACACTCCTGTTTTGTCTGAAACTGCGTATTTGCCACCAAGCTCTCCTGCTGTTATGGTTGGACGTTCCCCGCAGTTAGTCTATGTTCAGCCAGTTTCCCATGATTTGATTCATGGAGCAACAGCTGTTGCACCAGTCTCAGCTCGCCCTTTGTTGAATCATGTACAATTTCCGAAGCAGCAAGGAGGAACAATTGGTCCAGCAATGCCAGTTTGTGTGCCCCCACCTGTCCTAACAAGTGGACATCAGCCCTTTGCACTTCAAAGCCACATTCCACTTCTGCAACCTGGCTTTCCTGTCACACGACCTATTTCAGTCCCGGGACCAAATGGTTTCTATGGCACTAAGTTTTAG 1479 0.449 MGCRNRDSFTEDHTCSSSSLSDALLLTTMCIVGLPVDVHVKDGSVYSGIFHTASVHADYGIVLKKARMTKKGKGNTNVGNEGLVDTLVILSGDLVQVVAKGVMLPADGVGGNITGDDEEAVAHSVCSESKTCEVENHTGPLMDAKQINQSRQAGDDKSNSKGKADDCTQKSGFVNGKIDEKIQSLNSSHEADTCLGQEVAVEHESTDSTSSPFDNGLFCNNAPASVKTDDRCSERSTSAESVSTNSTHGVDLISESQPARSAEISAPRVTDSSRNAKEFKLNPAAKTFSPSFTNPMSATSAANMVYIPNSSPVVPVASIQPEVGFNTFASRPSVPVKVAQYNNLTVGNGGSGSQFSQPIVGHVAHRTQPLRYATHYTPVLSETAYLPPSSPAVMVGRSPQLVYVQPVSHDLIHGATAVAPVSARPLLNHVQFPKQQGGTIGPAMPVCVPPPVLTSGHQPFALQSHIPLLQPGFPVTRPISVPGPNGFYGTKF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01076 492 PANTHER ATAXIN 2-RELATED 1 489 IPR045117 GO:0003723
Cca09g01076 492 Pfam Ataxin 2 SM domain 22 100 IPR025852 -
Cca09g01076 492 PANTHER POLYADENYLATE-BINDING PROTEIN INTERACTING PROTEIN 1 489 - -
Cca09g01076 492 MobiDBLite consensus disorder prediction 137 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01076 Cca-Chr9 31705225 31712039 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01076 - - gmx:100809285 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01076 09 31705225 31712039 Cca09g01076 09 31705225 31712039 ECH