Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01066 ATGAGAAGAAGGCCTGGAATTGGAGGGCTGCAGACGCATGCCGCTGCGAGGGATCAATTCCGTTTGCTCGGTGAAAATGTCGCAAAGATCAGAACCGATTTGATGAAGGAGCAGCTTGCTACGTTTCGCTCTCAGCTAGAAGACTTTGCTCGCAAACACAAGAATGACATCCGCAAGAACCCTGCATTCAGATCACAGTTTCATGAGATGTGTGCTAAAGTTGGAGTGGATCCCTTGGCCTCAAACAAAGGTTTCTGGGCAGAGCTTTTAGGAATTGGTGACTTCTATTATGAACTCGGGGTTCAAATAGTGGATATTTGCTTGGCCACTAGAGCCCACAATGGAGGACTGATCAACCTGCAAGAACTCTGCCATCTCCTTCGTCAAAGACGAAAAAGTGATCGTGGAGTTGTTTCCGAGGATGATTGCTTGCGTGCTATTAGTAAGCTGAAGGTTCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACAGAGTTGAACAAAGACCACAATGAAATTCTAGAACTTGCCCAGGCTCAAGGATTTGTGACTGTTGATGAAGTAGAGAGGCGGTTATCTTGGAGTTCCGGCCGAGCTGTTGATGCCCTTGATACATTACTTGATGAAGGACTTGCAATGATTGATGATGGCCATAGAGATGGTAAAAGGAGGTACTGGTTTCCTTGTGTGTCACCCATCTCATCTCTAGTAGGAGTTGATTCCTGA 753 0.4542 MRRRPGIGGLQTHAAARDQFRLLGENVAKIRTDLMKEQLATFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRAHNGGLINLQELCHLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKKKLVRSVPTELNKDHNEILELAQAQGFVTVDEVERRLSWSSGRAVDALDTLLDEGLAMIDDGHRDGKRRYWFPCVSPISSLVGVDS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01066 250 Pfam EAP30/Vps36 family 6 225 IPR040608 -
Cca09g01066 250 Gene3D - 91 171 IPR036388 -
Cca09g01066 250 PIRSF ESCRT2_Vps22 1 244 IPR016689 GO:0000814|GO:0071985
Cca09g01066 250 SUPERFAMILY "Winged helix" DNA-binding domain 24 174 IPR036390 -
Cca09g01066 250 SUPERFAMILY "Winged helix" DNA-binding domain 175 238 IPR036390 -
Cca09g01066 250 Gene3D - 24 85 - -
Cca09g01066 250 Gene3D - 172 245 IPR036388 -
Cca09g01066 250 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 1 240 IPR016689 GO:0000814|GO:0071985
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01066 K12188 - gmx:100781799 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01066 09 31409587 31414948 Cca09g01066 09 31409587 31414948 ECH