LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g01052	ATGAAGCACCCAAAACCCCAAACCCCAACACCTGCACCCTCATCAAGATCTTCATCACTCTCGTCGCACCTCGCTATGGTGGAACTCAAGCAGAGGATCCTAACCTCGCTCTCAAAGCTCTCCGACAGAGACACCCACCAGATCGCCGTCGAGGATCTCGAGAAGACCATCGCCGCCCTCTCGCCGGACGCCATTCCCATGATACTAAACTGCCTATACGACGCCGCCACCGACCCCAAGCCCGCGGTCAAGCGCGACGCCCTCCGCCTCCTCGCCGCCGTATGCGCCGCCCACTCCGACGCCGCCGCCGCCCACCTCACCAAGATCATCGGCCACCTCGTCCGCCGCCTCAAGGACGCCGACTCCGCCGTCCGCGATGCCTGCCGCGACACCGTCGGCGCGCTCGCCGCCCAGTACTTGAAGGCCGACGCCGCCGCCGCCGGCGGGGTGGGCACGGTGGTGGGGCTGTTCGTCAAGCCGCTGTTCGAGGCCATGGGGGAGCAGAACAAGggcgtgcagggcggcgcggcggcctgcatggccaagatggtggagtgcgccggcggcggcggcggcgggggggaggcgccggtggcggcgTTCCAGAAGCTGTGTCCGAGGATCTGTAAGCTGCTCAACAGTCCCAACTTTATGGCCAAGGCGGCGATTTTGCCGGTGGTTGCTAGCCTGTCACAGGTTGGAGCAATTGCACCACATAGTCTGGAACATTTGCTACCTAGCATTCATGAATGCCTTACCAGTACTGATTGGGCAACACGTAAAGCAGCAGCTGAGGCATTAAATTCCTTGGCTTTGCATTCAAGCAGCTTGGTTACTGATAGAACAGCACCCACATTGACAGTACTTGAGGCTTGCCGATTTGACAAGATAAAGCCAGTGAGAGATAGCATCAATGAGGCATTGCAATTGTGGAAAAAGATTGCAGGGAAAGGAGATGCATCCCCTGATGATTCAAAGCCCTCATCTGACGGTGGGAATGAGCCAGCTATTATGTCAGAAACAAATGACTCAAAAAAAGTAAATCCTGATGAGAGGAAGACTGATCCATCAGTAAAGGATTCATCAACTAGTTCTTCAAATATGGATTCAACTGCTAAGGCCAAAGCAGCTGGCATCTCAGAGAAGGCAGTTGTAATACTGAAAAAGAAAGCACCTGTATTATCTGATAAAGAACTAAATCCAGAATTTTTCCAAAAACTTGAAAGAAGGGGTTCAGATGATTTACCGGTGGAAGTAGTTGTTCCTCGTAGAGGCCTCAATTCTTCAAACAATGAGGAAGAATCAGAGGCAAATGCTAAAGATTCAAAAGAAAGAACAAATTCTGTTGGAAATATCTCTAGCAATGATGATTTTCATGGATCTTCCAGTAATAAATATCGTATGTTTGAGCGAGGCAATGATGGAAATTCCAAACAAAGGAATTATGATGATTTTGGCCATGACAGATACACTGAAAGGAGAGTGAGTTCAAAAGAACTGAGGGCAAAAGCATATGATACTGATGATAGGACTGAAAATGATCAGAGGGATGGTTCTGCCAATCTTGCAGGTTTTTCTAAAACGGATGGTCAATCAGAAGTACCCTTCTCCAATAACAGAGGAAACTGGTTGGCCATCCAGAGGCAGTTACTGCAACTGGAAAGACAACAAGTTCATCTGATGAACATGCTGCAGGATTTCATGGGTGGATCACATGATAGCATGGTTACGCTAGAGAACAGAGTGCGAGGTCTTGAGAGAATTGTTGAAGACATGTCACGAGATCTATCCATATCATCAGGTCGTAGAAACTTTTCAGGGTTTGAGGGATCATCTAGTAGACCTTCTGGCAAGTATAATGGTTTCAATGACTACTCCAGTTCCAAGTATGGGAGAGGTGGTGATGGACGCATGCCATTTGGTGAAAGATTTGCTCAGTCTGATGGAAGTGCTTTGGGAATGAGGGGAAGAGGGCCATCTTGGAGATCTGACATGTCTGAGGGGTGGGATCTTCCCGGCTATGGTGCCTCTAGAAATGGCCAGATTTCCTCTAGGAGGGGTTTTGGGGGTAGCTCTGCTGATGGAAGATCACCAAAATCTGTGCATGACAATGATCAAGCAGGCAACAGGAGAGCTTGGGATAAAGCAGCAATGCCCATCCGGCTTGGTGAGGGACCTTCTGCAAGAAGTGTCTGGCAAGCTTCTAAGGACGAAGCTACCTTGGAAGCAATTCGGGTAGCTGGTGAGGACAATGGAACATCTCGAGCAACAAGAGTAGCAATCCCTGAAATGACTGCAGAAGCTCTTGCTGATGACAATGTTGGACAGGAGAGGGATGCCATCTGGACTTCTTGGAGCAATGCAATGGATGCCCTTCAAGTAGGTGATGTAGATTCAGCCTTTGCAGAAGTATTGTCCACTGGTGATGATATTTTGCTTGTAAAGCTAATGGATAGAACAGGCCCTGTAATTGACCAACTTTCCAGTGAAGTTGCATGTGAAATTGTAAATGCCATTGGACAATTCTTACTGGACCAGAACATGTATGACATCTGTTTGTCTTGGATTCAGCAGTTGCTGGAGATAGTATTGGAAAATGGCCCTGATACCTTTAGCATTCCCATGGAAGTAAAGAAAGAGCTGCTGCTGAATTTACACGAAGCTTCAACAGATACAGCTGAGGCCTGGGAAGGGGTACAGCCAGATCAGCTTTTATTGCAGATGGCATCAGCCTGGGAAATTGATCTGCAACAGCATGACAAATAG	2766	0.4671	MKHPKPQTPTPAPSSRSSSLSSHLAMVELKQRILTSLSKLSDRDTHQIAVEDLEKTIAALSPDAIPMILNCLYDAATDPKPAVKRDALRLLAAVCAAHSDAAAAHLTKIIGHLVRRLKDADSAVRDACRDTVGALAAQYLKADAAAAGGVGTVVGLFVKPLFEAMGEQNKGVQGGAAACMAKMVECAGGGGGGGEAPVAAFQKLCPRICKLLNSPNFMAKAAILPVVASLSQVGAIAPHSLEHLLPSIHECLTSTDWATRKAAAEALNSLALHSSSLVTDRTAPTLTVLEACRFDKIKPVRDSINEALQLWKKIAGKGDASPDDSKPSSDGGNEPAIMSETNDSKKVNPDERKTDPSVKDSSTSSSNMDSTAKAKAAGISEKAVVILKKKAPVLSDKELNPEFFQKLERRGSDDLPVEVVVPRRGLNSSNNEEESEANAKDSKERTNSVGNISSNDDFHGSSSNKYRMFERGNDGNSKQRNYDDFGHDRYTERRVSSKELRAKAYDTDDRTENDQRDGSANLAGFSKTDGQSEVPFSNNRGNWLAIQRQLLQLERQQVHLMNMLQDFMGGSHDSMVTLENRVRGLERIVEDMSRDLSISSGRRNFSGFEGSSSRPSGKYNGFNDYSSSKYGRGGDGRMPFGERFAQSDGSALGMRGRGPSWRSDMSEGWDLPGYGASRNGQISSRRGFGGSSADGRSPKSVHDNDQAGNRRAWDKAAMPIRLGEGPSARSVWQASKDEATLEAIRVAGEDNGTSRATRVAIPEMTAEALADDNVGQERDAIWTSWSNAMDALQVGDVDSAFAEVLSTGDDILLVKLMDRTGPVIDQLSSEVACEIVNAIGQFLLDQNMYDICLSWIQQLLEIVLENGPDTFSIPMEVKKELLLNLHEASTDTAEAWEGVQPDQLLLQMASAWEIDLQQHDK	921

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g01052	921	PANTHER	MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1	14	921	IPR033337	GO:0005874\|GO:0008017
	Cca09g01052	921	Gene3D	-	28	145	IPR011989	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	672	728	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	359	373	-	-
	Cca09g01052	921	Gene3D	-	146	298	IPR011989	-
	Cca09g01052	921	SMART	TOG_3	58	303	IPR034085	-
	Cca09g01052	921	PANTHER	MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1	14	921	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	444	470	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	517	536	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	344	358	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	471	516	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	421	536	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	1	21	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	315	377	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	647	666	-	-
	Cca09g01052	921	MobiDBLite	consensus disorder prediction	326	343	-	-
	Cca09g01052	921	Coils	Coil	575	595	-	-
	Cca09g01052	921	SUPERFAMILY	ARM repeat	34	847	IPR016024	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g01052	Cca-Chr9	31110714	31116575	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g01052	-		-	gmx:100804845	1553.11

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g01052	09	31110714	31116575	Cca09g01052	09	31110714	31116575	ECH