Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00554 ATGTTCAAAGTCTCCATTCAGTGTGTGGCGCCGTTTACATtctctctctcctctctctccttctcatcctcttctctTAGTTTCTCTGTTCGTTCTACTTCTATTCGAGCAATGGCATCTCATATTGTTGGTTATCCACGCATGGGACCCAAGAGAGAGCTTAAGTTTGCCTTGGAATCCTTTTGGGATGGAAAGAGTAGTGCTGAGGAGCTGCAGAAGGTTGCTGCAGACCTTAGGTCAGCCATCTGGAAGCAGATGGCTGAAGCTGGAATAAAGTATATTCCAAGCAACACCTTCTCATACTATGATCAAGTACTGGACACAACAGCCATGCTTGGGGCAGTTCCTCCTAGATATGATTGGAACGGTGGGGAGATAGGATTTGATGTTTACTTCTCCATGGCAAGAGGGAATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAACTACCACTACATTGTTCCTGAATTGGGTCCAGATGTTAAGTTCTCCTATGCATCACACAAGGCTGTGGATGAATACAGAGAGGCCAAAGTTCTGGGAATTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTGCTGTCAAAGCCATCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCTTAATTGACAAGATCCTTCCTGTCTACAGGGAGGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACCTGGATTCAGTTTGACGAACCTACCCTTGTGAAGGATCTCGATGCTAACCAGTTACAAGCATTTACACATGCCTATGCAGAGCTAGAATCAAGTTTATCTGGTTTGAATGTTCTGATTGAGACATACTTTGCTGATGTCCCTGCTGAAGCATACAAAACACTCACCTCTTTGAAGGCTGTTACTGCATATGGATTTGACATTGTTCGTGGAACAAAGACCCTTGATTTGATCAAGCAAGGATTTCCATCTGGAAAATTTCTTTTTGCTGGTGTTGTTGATGGAAGAAATATTTGGGCCAATAATCTTGCGTCTTCTCTGAACACCATGCAGGCGCTTGGGGACATTGTTGGCAAAGACAAGGTTGTGGTTTCCACATCCTGTTCTCTTCTTCACACTGCAGTTGATCTGGTGAATGAGACCAAGTTGGACCAAGAGATTAAGTCTTGGCTCGCATTTGCAGCACAAAAAGTTGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAGAAGAATGAGGTTTTCTTTTCTGCTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCAAGAGTGACAGATGAGGCTGTTCAAAAGGCTGCTGCTGCTCTGAGGGGCTCTGATCATCGAAGGGCCGCAAATGTTAGTGCCAGGTTGGATGCTCAACAAAAGAAACTGAATCTTCCTGTTCTTCCAACCACTACAATTGGATCTTTTCCTCAGACTTCTGATCTTAGAAGAGTTCGCCGTGAGTTCAAGGCAAACAAGATCTCTGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTAACAATGTTGTGAAGCTCCAGGAAGAACTAGACATTGATGTCTTGGTGCATGGAGAGCCTGAGAGGAATGACATGGTTGAGTATTTTGGAGAACAATTGTCTGGCTTTGCTTTCACTGCCAATGGGTGGGTGCAATCATATGGATCCCGCTGTGTCAAACCACCCATCATATACGGTGATGTGAGCCGTCCCAAGCCCATGACTGTTTTCTGGTCTTCAACTGCTCAAAGTATGACCAGAAGACCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTCGTTAGAGATGACCAGCCAAGATTTGAAACATGCTACCAGATTGCTTTGGCTATCAAGGATGAGGTTGAGGATCTTGAGAAAGCTGGTATTACTGTCATACAGATTGACGAGGCTGCTCTAAGAGAAGGTTTGCCTCTGAGGAAGTCTGAGGAGGCTTTCTATCTGAACTGGGCAGTTCACTCATTTAGAATTACCAACTGTGGTGTGAAGGATACTACTCAGATTCACACTCATATGTGCTACTCCAACTTCAATGATATCATTCACTCAATCATAGACATGGATGCTGATGTGATCACTATTGAGAACTCTAGATCAGATGAGAAGTTACTTTCAGTCTTCCGTGAGGGAGTGAAATATGGAGCTGGCATTGGTCCTGGTGTTTATGATATTCACTCACCCAGGATTCCACCTACAGGAGAAATTGCTGACAGGATCAACAAGATGCTTGCAGTTCTTGAAAGCAACATTCTCTGGGTCAACCCAGACTGTGGCCTCAAGACACGCAAATACACTGAGGTCAAACCTGCTCTCACCAATATGGTTGCTGCTGCCAAACTTATTCGCAACCTGTTAGCTAGTGCCAAGTGA 2409 0.4396 MFKVSIQCVAPFTFSLSSLSFSSSSLSFSVRSTSIRAMASHIVGYPRMGPKRELKFALESFWDGKSSAEELQKVAADLRSAIWKQMAEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYDWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVKFSYASHKAVDEYREAKVLGINTVPVLVGPVSYLLLSKPSKGVEKSFSLLSLIDKILPVYREVVAELKAAGATWIQFDEPTLVKDLDANQLQAFTHAYAELESSLSGLNVLIETYFADVPAEAYKTLTSLKAVTAYGFDIVRGTKTLDLIKQGFPSGKFLFAGVVDGRNIWANNLASSLNTMQALGDIVGKDKVVVSTSCSLLHTAVDLVNETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKNEVFFSANAAALASRKSSPRVTDEAVQKAAAALRGSDHRRAANVSARLDAQQKKLNLPVLPTTTIGSFPQTSDLRRVRREFKANKISEEDYIRFIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQSMTRRPMKGMLTGPVTILNWSFVRDDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEEAFYLNWAVHSFRITNCGVKDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTGEIADRINKMLAVLESNILWVNPDCGLKTRKYTEVKPALTNMVAAAKLIRNLLASAK 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00554 802 PIRSF Met_synth_MetE 37 802 IPR006276 GO:0003871|GO:0008270|GO:0009086
Cca09g00554 802 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 9 802 - -
Cca09g00554 802 SUPERFAMILY UROD/MetE-like 434 795 IPR038071 -
Cca09g00554 802 Gene3D - 427 795 IPR038071 -
Cca09g00554 802 CDD CIMS_C_terminal_like 470 793 IPR002629 GO:0003871|GO:0008270|GO:0009086
Cca09g00554 802 CDD CIMS_N_terminal_like 40 404 - -
Cca09g00554 802 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 3, CHLOROPLASTIC 9 802 - -
Cca09g00554 802 TIGRFAM met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 43 796 IPR006276 GO:0003871|GO:0008270|GO:0009086
Cca09g00554 802 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 38 797 IPR006276 GO:0003871|GO:0008270|GO:0009086
Cca09g00554 802 Gene3D - 42 562 IPR038071 -
Cca09g00554 802 Pfam Cobalamin-independent synthase, Catalytic domain 469 792 IPR002629 GO:0003871|GO:0008270|GO:0009086
Cca09g00554 802 Pfam Cobalamin-independent synthase, N-terminal domain 40 352 IPR013215 GO:0003871|GO:0008270|GO:0008652
Cca09g00554 802 SUPERFAMILY UROD/MetE-like 40 431 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00554 Cca-Chr9 14253936 14259587 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00554 K00549 - gmx:100779947 1498.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00629 07 9094357 9100376 Cca09g00554 09 14253936 14259587 PCT