Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02245 ATGTCTCTCCCCACCAAACGGTCGGGCACCGCTGGTTCCTCCCCCTCGCCACCACCCCCTATGAAAAAGGCTAAGTCCCTCCTCCGCCCCCCTTCCGACGACGCCGTTTTGGACCCTTCCTCCATGCCTCTCGACGAAGATCTCCCCAATGCCCGCGCCGCCAATCTCTCCCGCAAGAAAGCCACCCCTCCCCAACCCGCCAAGAAGCTCCTCATCAAGCTCCACAAAGCTAAACCAACATTGCCCACAAATTTTGAGGAGGATACATGGGCAAAACTAAAGTCTGCCATTTGTGCTATATTTTTGAAGCAACCAAACTCTTGTGACTTGGAGAAGCTTTATCAGGCTGTGAATGATCTCTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGCGCATATATCTGCGGCACTTCAGTCTTTGGTTGGCCAAAGCCCAGATTTGGTTGTTTTTCTGTCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTATCTGGATAGGACATATGTGAAGCAAACAGCAAATGTACGGTCATTGTGGGACATGGGTTTACAACTTTTCCGCAAACATCTTTCATTGTCTCCAGAAGTTGAACACAAAACTGTCACTGGTCTTCTTCGAATGATTGAAAGTGAAAGAAAAGGTGAAGCAGTGGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTAGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTAGAATGCACATCTGAATTTTATGCTGCTGAAGGTGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGACAAGATTGCAAGAAGAACATGACAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACGGCAGAAAAGCAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGCTTTGCTATGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGTACTCGCTCTTTTCAAGGGTCAATGCCCTTGAGTCACTGAGGCAGGCCATTAGTTCATACATCAGGAGAACTGGTCAGGGCATTGTCTTGGATGAGGAGAAAGATAAAGATATGGTTTCAGCCCTTCTGGAATTTAAGGCTTCTCTTGACACAACATGGGAAGAAAGCTTTTTCAAGAATGAAGCATTCTGTAACACCATTAAAGATTCATTTGAGCATCTTATCAATCTTCGTCAGAACCGACCTGCCGAGTTGATTGCCAAATTTTTGGATGAGAAGCTTCGTGCAGGTAATAAGGGCACTTCAGAAGAAGAGTTGGAGGGTACACTTGATAAAGTCCTGGTTTTATTCAGGTTCATTCAGGGCAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAGAGACTGTTGTTAGGAAAAAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGTTGAAGACCGAGTGTGGCAGCCAGTTCACAAACAAACTTGAAGGGATGTTTAAGGACATTGAATTATCAAAAGAAATAAACGAATCGTTCAAACAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAACGTTTACCAGGATATTTTCAAAGAGTTCTACCTAAGCAAATACAGTGGAAGGCGTCTGATGTGGCAAAATTCATTAGGTCACTGTGTCTTAAAGGCAGAGTTTCCTAAAGGGAAAAAGGAGCTGGCTGTCTCCCTATTTCAGACTGTTGTTCTGATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATTAAGGACTCTACTAGTATTGAGGACAAGGAACTTAGAAGGACTTTGCAATCACTTGCCTGTGGAAAAGTTCGTGTCCTGCAAAAGTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGATGGCTTTACAGCTCCTCTTTACCGTATTAAGGTGAATGCAATTCAGTTGAAGGAGACAGTAGAGGAGAACACAAGCACCACTGAAAGAGTTTTCCAAGACCGCCAGTATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAATTGCTTAGTCATACCATTCTTATTACTGAACTCTTCCAACAGCTCAAATTTCCAATAAAACCAGCTGACTTGAAGAAAAGGATCGAAAGCCTTATTGACAGGGAGTATCTGGAGAGGGACAAGAACAACCCTCAAGTATACAATTACCTGGCATAG 2361 0.4278 MSLPTKRSGTAGSSPSPPPPMKKAKSLLRPPSDDAVLDPSSMPLDEDLPNARAANLSRKKATPPQPAKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPNSCDLEKLYQAVNDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIESERKGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGVKYMQQSDVPDYLKHVETRLQEEHDRCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFAMLMDGNRIEDLQRMYSLFSRVNALESLRQAISSYIRRTGQGIVLDEEKDKDMVSALLEFKASLDTTWEESFFKNEAFCNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNDGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKLLSHTILITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQVYNYLA 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02245 786 Gene3D Cullin Repeats 429 540 - -
Cca08g02245 786 MobiDBLite consensus disorder prediction 1 67 - -
Cca08g02245 786 SMART Cullin_Nedd8_2 715 780 IPR019559 -
Cca08g02245 786 Gene3D Cullin; Chain C, Domain 2 545 700 - -
Cca08g02245 786 Pfam Cullin family 90 687 IPR001373 GO:0006511|GO:0031625
Cca08g02245 786 SUPERFAMILY "Winged helix" DNA-binding domain 698 786 IPR036390 -
Cca08g02245 786 ProSitePatterns Cullin family signature. 759 786 IPR016157 GO:0006511|GO:0031461|GO:0031625
Cca08g02245 786 Gene3D Cullin Repeats 327 428 - -
Cca08g02245 786 Gene3D - 713 786 IPR036388 -
Cca08g02245 786 SUPERFAMILY Cullin homology domain 427 697 IPR036317 -
Cca08g02245 786 PANTHER CULLIN-4A 48 786 - -
Cca08g02245 786 ProSiteProfiles Cullin family profile. 430 659 IPR016158 -
Cca08g02245 786 Pfam Cullin protein neddylation domain 718 778 IPR019559 -
Cca08g02245 786 SMART cul_2 460 609 IPR016158 -
Cca08g02245 786 PANTHER CULLIN 48 786 IPR045093 -
Cca08g02245 786 Gene3D Cullin Repeats 212 325 - -
Cca08g02245 786 Gene3D Cullin Repeats 77 208 - -
Cca08g02245 786 SUPERFAMILY Cullin repeat-like 84 426 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02245 Cca-Chr8 56029629 56041977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02245 K10609 - gmx:100805491 1489.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02245 08 56029629 56041977 Cca08g02245 08 56029629 56041977 ECH
Cca08g02245 08 56029629 56041977 Cca11g02792 11 55271157 55279736 PCT