Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01803 ATGGTGAAGGTGCGCATGAACACCGCCGATGTGGCCGCCGAGGTCAAATGCCTCCGACGCCTAATCGGAATGCGATGCTCCAACGTCTACGATCTCTCTCCAAAGACGTATGTGTTCAAGCTGATGAACAGCAGTGGCGTTTCGGAATCCGGCGAGAGCGAGAAGGTTCTGCTGCTCATGGAAAGTGGCGTTAGATTGCACTCTACTATCTACATGCGTGACAAGAGCAACACCCCTTCGGGTTTCACTCTCAAATTGAGGAAGCACATTCGGACCAGAAGGCTCGAGGATGTGCGCCAACTTGGGTACGATCGGATTATTCTCTTCCAATTTGGACTTGGGGAGAATGCAAACTATGTTATATTGGAGCTGTATGCTCAGGGGAACATCCTCCTCACAGATTCTAGTTTCACAGTCATGACTCTACTGCGATCTCACAGGGATGATGATAAAGGGCTTGCAATCATGTCACGCCATCGTTATCCTGTGGAAAGTTGTCGAGTTTTTGAGCAAACTACTATTGAAAAGTTGCAGACAGCCCTAGTGTCTTCGAAGGAAGATGATAACGAGGAGGCTGTTAAGGCCAATGGAAATGGAAGTAATGCTTCATATGTAGGTAAAGAGAAGCAGGGAAACCAGAAAGGTGGGAAGTCAGCCACATTGAAAATTGTCCTTGGGGAGGCACTTGGTTATGGACCTGCTCTTTCTGAACATATAATATTAGATGCTGGCCTAATCCCCAGTACAAAAGTCCCCAAAGATAGAACGTGGGATGATGCAACTGTTCAGGCCTTGGTCCAAGCTGTTGCAAAGTTTGAAGATTGGATGCAGGATATTATTTCAGGTGAAACAGTCCCTGAAGGATACATTTTGATGCAGAACAAAAATTTGGGGAAGGAATCTTCCATATCTCAATCAGGAAGTGTTAGCCAGATGTATGATGAGTTCTGCCCCATCCTGCTCAACCAGTTTAAGTCAAGGGATTATACAAAGTTTGAGACATTTGATGCAGCCTTGGATGAGTTCTATAGCAAAATCGAGAGTCAAAGGTCTGAACAACAGCAGAAAGCCAAAGAAAACTCAGCTGCTCAGAAACTTAATAAGATTCGCCAGGATCAGGAAAATCGAGTACATGCTTTGAGGAAAGAAGCTGATCACTGTGTTAAGATGGCAGAATTGATAGAATACAACTTGGAAGATGTGGATGCTGCTATATTAGCTGTCCGCGTAGCTCTTGCAAAGGGTATGAACTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGAAACCCAGTAGCTGGTCTCATTGACAAACTCCATCTTGATAGGAACTGCATGACTTTACTGTTAAGCAACAATCTTGATGAAATGGATGATGATGAGAAGACACTCCCTGTAGATAAGGTTGAAGTTGATTTAGCTCTCTCAGCACATGCCAATGCTCGGAGGTGGTATGAACAGAAGAAAAAGCAGGAGAGCAAACAGGAAAAGACTGTAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAGAGAAAGACTCGCCTACAGCTTAGTCAGGAAAAAACTGTTGCCTCAATTTCACATATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGACGTGATGCACAGCAAAATGAGCTGATAGTGAAGCGTTATATGTCAAAAGGAGATCTGTATGTACATGCCGATCTACATGGAGCTTCTAGTACAGTTATCAAGAATCACAAGCCTGTGCAACCAGTTCCACCGCTGACCCTGAATCAAGCAGGGTGTTTCACAGTCTGCCATAGCCAGGCATGGGATTCAAAAATTGTTACTAGTGCCTGGTGGGTCTATCCTCATCAGGTTAGTAAAACTGCTCCGACAGGTGAATATCTGACAGTAGGGAGTTTCATGATCCGGGGAAAGAAAAATTTTCTTCCACCACACCCTCTTATCATGGGTTTTGGCCTACTATTTCGCTTGGATGAGAGTTCCTTGGGTTCACATTTAAATGAaagaagagtaagaggagaggaggaagcagcagaagatgaCTATGACGAAACTGGCCCTCTTGAAGACAAATCTGATTCAGAGTCTGAGAAGGATGTTGCTGATGTAAAATCTGCTACAGAATCAGAAAGGAACGGTAATTTATTGGCAGATTCACACAAACCCCTATCAGAAGACTTTCCTGCAGACTCATCTCAAACTAGTTTGGCTACTATAAATGCCGAAACTGCAATTTCACAGGATTTTCCTGCAAAAGAGACAAGTAAGTCAAAGATGGTTGATAGGGAGATATTATCAGACATTGGTGAAAATGGCATAGCGTCTGTCACCCAACTTGAGGAACTTATTGATCAAGCTCTGGAACTTGGATCTGTTGCTAAATCCAGTAAAAGTTATGGAAATGAGAACTCTCAAATTGATTTAGGCAGTGAGCAACATTTTGATCAAAGCAAAGCTGCAGTAAGGGAAAAACCTTATATATCAAAAGCTGAGAGACGAAAACTTAAAAAAGAACAGAAACATGGAGAAGCAGATTCAAATGTTCAACATGGAAAGAATGAATCAAAACTAAAAGATATTTCTGCTAACATACCTGCAAAAGAAGATCAAAATTTGAAAAAAGCTGGTGGTCAAAAAACCAGTCGTGGACAGAAGGGCAAACTTAAGAAGATAAAGGAGAAGTATGCTGACCAGGATGAGGAAGAAAGGAACATCCGAATGGCATTGTTGGCTTCTTCTGGAAAATCAATCAAGAAGGAAGAAGTGTCATCTGAAAATGAAGCTTTGGAGAAGGGGGAAAAACCTAGCAGTGGTCCTTCTGATGCTCCAAAAATATGTTACAAGTGTAAGAAAGCAGGTCACTTATCTCGGGATTGTAAGGAGCAACAAGATGATCTGTTGCATAGGCATGCAACTGGTGAAGCTGAAGAAAATTCCAAAATGACTGCTATTGACACTTCCCAAGCAGACAGGGTGGCAATGGAAGAAGATGATATTCATGAAATAGGAGAAGAGGAGAAAGAAAAACTAAATGACGTTGATTACTTGACAGGGAATCCACTTCCTAATGACATTCTCTTATATGCTGTTCCTGTCTGTGGTCCTTACAATGCAGTTCAGTCTTACAAATATCGGGTGAAGATAATTCCTGGACCAGCAAAGAAAGGGAAAGCTGCAAAAACTGCGATGAACTTATTCAGCCACATGTCAGAAGCAACAAGCCGGGAGAAGGAGTTGATGAAAGCCTGTACAGATCCTGAACTAGTTGCTGCAATTATTGGTAATGTGAAAATATCAGCAGCTGGCCTTACTCAATTGaagcaaaagcaaaagaaaggcaaaaagagcagcaaaCAACAGAGTTAA 3408 0.4155 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHSTIYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGENANYVILELYAQGNILLTDSSFTVMTLLRSHRDDDKGLAIMSRHRYPVESCRVFEQTTIEKLQTALVSSKEDDNEEAVKANGNGSNASYVGKEKQGNQKGGKSATLKIVLGEALGYGPALSEHIILDAGLIPSTKVPKDRTWDDATVQALVQAVAKFEDWMQDIISGETVPEGYILMQNKNLGKESSISQSGSVSQMYDEFCPILLNQFKSRDYTKFETFDAALDEFYSKIESQRSEQQQKAKENSAAQKLNKIRQDQENRVHALRKEADHCVKMAELIEYNLEDVDAAILAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDKLHLDRNCMTLLLSNNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYEQKKKQESKQEKTVTAHEKAFKAAERKTRLQLSQEKTVASISHMRKVHWFEKFNWFISSENYLVISGRDAQQNELIVKRYMSKGDLYVHADLHGASSTVIKNHKPVQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEAAEDDYDETGPLEDKSDSESEKDVADVKSATESERNGNLLADSHKPLSEDFPADSSQTSLATINAETAISQDFPAKETSKSKMVDREILSDIGENGIASVTQLEELIDQALELGSVAKSSKSYGNENSQIDLGSEQHFDQSKAAVREKPYISKAERRKLKKEQKHGEADSNVQHGKNESKLKDISANIPAKEDQNLKKAGGQKTSRGQKGKLKKIKEKYADQDEEERNIRMALLASSGKSIKKEEVSSENEALEKGEKPSSGPSDAPKICYKCKKAGHLSRDCKEQQDDLLHRHATGEAEENSKMTAIDTSQADRVAMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYNAVQSYKYRVKIIPGPAKKGKAAKTAMNLFSHMSEATSREKELMKACTDPELVAAIIGNVKISAAGLTQLKQKQKKGKKSSKQQS 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01803 1135 Pfam Zinc knuckle 959 975 IPR001878 GO:0003676|GO:0008270
Cca08g01803 1135 SMART c2hcfinal6 959 975 IPR001878 GO:0003676|GO:0008270
Cca08g01803 1135 PANTHER - 3 1123 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 350 369 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 904 920 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 830 877 - -
Cca08g01803 1135 SUPERFAMILY Retrovirus zinc finger-like domains 950 978 IPR036875 GO:0003676|GO:0008270
Cca08g01803 1135 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1123 - -
Cca08g01803 1135 Pfam NFACT protein RNA binding domain 540 651 IPR008532 -
Cca08g01803 1135 ProSiteProfiles Zinc finger CCHC-type profile. 960 975 IPR001878 GO:0003676|GO:0008270
Cca08g01803 1135 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Cca08g01803 1135 Coils Coil 356 383 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 703 720 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 680 747 - -
Cca08g01803 1135 Gene3D - 954 1008 - -
Cca08g01803 1135 Pfam NFACT N-terminal and middle domains 10 523 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 808 958 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 194 214 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 185 214 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 808 826 - -
Cca08g01803 1135 MobiDBLite consensus disorder prediction 932 948 - -
Cca08g01803 1135 Pfam NFACT protein C-terminal domain 1020 1113 IPR021846 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01803 K24971 - gmx:100803745 1979.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01803 08 50373348 50383763 Cca08g01803 08 50373348 50383763 ECH