Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01792 ATGGACATGCGAGGGGATGGGGTTTTCCCGGATGAGGTGGTTATTCAGATTCTAGCAAGGTTGCCTGTGAGGTCCCTTTTCAGGTTCAAAACCGTGTGCAAACTTTGGTATAAGTTGTCTTTGGATAAGTATTTCATTCAACTCTTCAATGAGGTGTCTAGGAAGAACCCCATGATTCTGGTGGAGATTTCGGATTCAGCTGAGTCCAAATCTAGCTTAATCTGTGTTGATAATTTGAGGGGTGTGTCTGAATTTTCACTGAATTTCTTGAATGATAGAGTTAAGGTTAGAGCATCTTGTAATGGATTGCTGTGTTGCTCTAGTATTCCTGACAAGGGTGTCTTCTATGTTTGCAATCCAGTCACTCGCGAGTACCGGTTGCTTCCCAAGAGGAGGGAAAGGCCGGTTACTCGATTTTATCCGGACGGCGAAGCTACCTTGGTTGGCTTGGCCTGTGATTCCATGTATCAGAAGTTCAATGTTGTTCTAGCCGGCTACCATCGCACGTTTGGTCATAGGCCGGATGGGAGCTTCATATGTTTGGTGTTTGATTCGGAGTTGAACAAGTGGAGGAAGTTCGTTTCCTTCCAGGATGACCATTTTACTCACATGAATAAGAACCAAGTTGTTTTTGTCAACAATGCTCTGCACTGGTTAACTGTTAGCTCTACTTATATACTTGTGCTTGATTTGAGTTGTGACATTTGGAGGAAGATGCAATTACCGTATGACTTGATTTATGGAGCGGGTAATCGGATTTATCTCTTGGACTTTGATGGCTCCTTGTCTATTATTAAAATTTCAGAAGCATGGATGAATATATGGGTGCTAAAAGATTACTGGAAAGATGAATGGTGTATGGTGGATAAGGTGAGTCTGAGGTGTATCAGAGGAATGGTGCCAGGCATTTTCCCAATCAGTCAGACAGGTGAATATGTTTTTTTAGCAACTCATAAGCAGATTTTGGTGTATCATCGCAAGAGTCAAGTTTGGAAAGAAATGTACTCTGTGAAGTATAGCTCAACACTCCCATTATGGTTTTCTGCTCATGCATATCGCAGCACAATGTTCTCATGTAATTGA 1083 0.4211 MDMRGDGVFPDEVVIQILARLPVRSLFRFKTVCKLWYKLSLDKYFIQLFNEVSRKNPMILVEISDSAESKSSLICVDNLRGVSEFSLNFLNDRVKVRASCNGLLCCSSIPDKGVFYVCNPVTREYRLLPKRRERPVTRFYPDGEATLVGLACDSMYQKFNVVLAGYHRTFGHRPDGSFICLVFDSELNKWRKFVSFQDDHFTHMNKNQVVFVNNALHWLTVSSTYILVLDLSCDIWRKMQLPYDLIYGAGNRIYLLDFDGSLSIIKISEAWMNIWVLKDYWKDEWCMVDKVSLRCIRGMVPGIFPISQTGEYVFLATHKQILVYHRKSQVWKEMYSVKYSSTLPLWFSAHAYRSTMFSCN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01792 360 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN 7 358 - -
Cca08g01792 360 SUPERFAMILY F-box domain 8 78 IPR036047 GO:0005515
Cca08g01792 360 ProSiteProfiles F-box domain profile. 9 52 IPR001810 GO:0005515
Cca08g01792 360 TIGRFAM F_box_assoc_1: F-box protein interaction domain 99 325 IPR017451 -
Cca08g01792 360 Gene3D - 9 45 - -
Cca08g01792 360 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN-RELATED 7 358 - -
Cca08g01792 360 SMART fbox_2 9 49 IPR001810 GO:0005515
Cca08g01792 360 Pfam F-box-like 10 42 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01792 Cca-Chr8 50164999 50166858 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01792 - - gmx:100811223 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01792 08 50164999 50166858 Cca08g01792 08 50164999 50166858 ECH