Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01790 ATGGAGCTACATTCACTGTTCAAGGGTTCATCTTCTGCTCTTTCTTATCCCCTCCTTAAGCTTTCAAAACCCACGATGATGGCATCCAACTGCGTTAGATTCAATTTCACTCACAACCCATGCCTCATATTCGCAAATGGGTACCCTTCTTCTTTTTCACTGCCACTTTCTGTTCAGAATAAGCCTAGAAAAGTATCGTCACTGATTGCGAGTGCCCGCAAGAAAGACAAGAAAGAAGATAACCATAGCTCTGTTCCCAAACCCGACGAGGTCACGGGTTTCTTCCCCGAAGCTGTGCTCCTTAAAAAGAGAACAGTTGAGGAAGAAGGGCAGCTTCTCCCGGAGTTTGAAGATGCTGAAGAAAGACAACTCTTTGAATCGCTGATGCTTGAGATGGAAAGTGATATGAATATTGAAATATTGCGCCACTATGAGGTTGTCTACTTAATTCATGAGAAGCATGCAGATGAGGTTGCAGCTGTCAATGAGAAAGTTCAAGACTTTTTGAGGGAGAAAAAAGGCCAGGTTTGGAGACTGAATGATTGGGGTATGAGAAGGCTAGCTTACAAAATAAAGAAAGCTAACAATGCTCACTACATGCTGATGAACTTCGAGTTGGATGCGAAATATATCAATGACTTCAAGATGCTGTTGGACCAAGATGAAAGAGTCATCCGGCATCTCGTGATAAAGAGGGATGAGGCGATCACTGAAGATTGCCCTCCTCCTCCGGAGTTTCATACTCTGCGTGCAaatgcagatgataatgacgatgaagaatttgatgaagattatgatgatgattgggatgaagaagaggtggatgactatgatgacaatgatggtggggatgaaattatttttgtagatggcgatgacaTAGATTCTAGAAATGAAACATCAGCAAATGTTAGACAACCAGAAACAAGAAAATTGAGGGCTGAGAATGTAAGTAGGGCCATAAAGAGTAAAGTGAAAGAGTTCCCTAGGCCATTGCTGGATCTTAGGGCGTCATCTATTGCCAAACTAATGGATAGAGCGTTTGGGCGAACTCTAAACCCTCCCTTTGATCCATATGCTAATTCCATCAACTTTATTCTTGCAGCTTATGTGATTCCCTATGTTGGCCTCACTGGTTATGTTGGTGCCAATCCACTACTGCAAAAGCCTTCTTCCAGGAAGCTTGTTGCGGGGCTTCTTGGAGTAGAGTCCGGGCAAGACGCGGTTATTCGAGCATTGCTGTATGAACGTGAAGCGCAATTGGTGCAACCGTATGGAGTGACGGTGGCAGAGTTCACAAATCGCATTTCAAGGCTCAGGAACAAGCTGGGAAAGGCAGGTGTGAAAGATGAGGGTATCACGGTGCCTAGGGCAGAAGGTGCTGAGGGAAGAGTCATGGGCAACATTCTCGTAGGTGACAAAAATTCACTGTCATATGCGAGGACTCCCAAAGAAATACTTAGGATAGTCTATGGATCTGGTGATGAACATGTTCCTGGTGGCTTCTTCCCTAAAGGAGGAAATGGTCGCATAGCTAAATCTTACTTAAACATCATCAATAATTTCTCAAACAGCGTCCTAAAAGAAACACATTAG 1596 0.4073 MELHSLFKGSSSALSYPLLKLSKPTMMASNCVRFNFTHNPCLIFANGYPSSFSLPLSVQNKPRKVSSLIASARKKDKKEDNHSSVPKPDEVTGFFPEAVLLKKRTVEEEGQLLPEFEDAEERQLFESLMLEMESDMNIEILRHYEVVYLIHEKHADEVAAVNEKVQDFLREKKGQVWRLNDWGMRRLAYKIKKANNAHYMLMNFELDAKYINDFKMLLDQDERVIRHLVIKRDEAITEDCPPPPEFHTLRANADDNDDEEFDEDYDDDWDEEEVDDYDDNDGGDEIIFVDGDDIDSRNETSANVRQPETRKLRAENVSRAIKSKVKEFPRPLLDLRASSIAKLMDRAFGRTLNPPFDPYANSINFILAAYVIPYVGLTGYVGANPLLQKPSSRKLVAGLLGVESGQDAVIRALLYEREAQLVQPYGVTVAEFTNRISRLRNKLGKAGVKDEGITVPRAEGAEGRVMGNILVGDKNSLSYARTPKEILRIVYGSGDEHVPGGFFPKGGNGRIAKSYLNIINNFSNSVLKETH 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01790 531 Pfam Ferritin-like domain 321 416 - -
Cca08g01790 531 Gene3D - 137 239 IPR014717 -
Cca08g01790 531 SUPERFAMILY Ribosomal protein S6 141 241 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca08g01790 531 Pfam Ribosomal protein S6 143 231 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca08g01790 531 ProSitePatterns Ribosomal protein S6 signature. 183 192 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca08g01790 531 PANTHER DESICCATION-LIKE PROTEIN 41 517 - -
Cca08g01790 531 Hamap 30S ribosomal protein S6 [rpsF]. 141 234 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca08g01790 531 CDD bS6 143 232 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca08g01790 531 MobiDBLite consensus disorder prediction 255 283 - -
Cca08g01790 531 MobiDBLite consensus disorder prediction 71 90 - -
Cca08g01790 531 TIGRFAM S6: ribosomal protein bS6 142 233 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca08g01790 531 MobiDBLite consensus disorder prediction 71 86 - -
Cca08g01790 531 MobiDBLite consensus disorder prediction 237 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01790 Cca-Chr8 50123294 50148532 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01790 - - gmx:100790128 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01790 08 50123294 50148532 Cca08g01790 08 50123294 50148532 ECH