Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01786 ATGGAATTTGAATCTCCAACTTCTCGCCCTATCCCAAGTGACGTCGTTTTCGACCCTCCGCCGTTTCCGATCATCCACCCCTTTCTGCCGCCGCCTCCTCCGCTCTCCACGGTGCTGCTTCCTTTTCCCTTCAACCCTTCACTTTTCTTCGTAATGGACAATCAAAGGTCCATTTCTCTGCTTCAGTTCATGGCTGATGAAGGACTTGTTCCGCCGCCAGAAGAGGATGAGAAAAGGAAAAACGCTATTAAGAAGCTCAAACAGATAGTCTCATTATGGATCAAGAAGGTTGCATGTCAGCATCAACTACCAAAACACCAGATTGCTGTTACTTCTGCCACAATACTGACATATGGATCTTATGGCCTTGGAGTTCACAGCTCAGAGTCTGACATTGATGCTTTGTGTGTTGCTCCTTTTTTTGCCTCAATTGCAGAAGACTTTTTTGTTGTGTTGCATGACATGCTTAAAAGGAGTCCTGAAGTGTCAGATATTCACTGTGTCAAGAGTGCAAAAGTCCCTCTAATGCGATTTAAATTTGATGGGATTTCCATTGATCTTCCATATGCCCGGCTTAATGTACTATATGTTCCTGAGAATGTTGACATTCTAAATCCATTTTTCATGAGGAACATTGATGATACCAGCTGGAAAAGTTTGTCTGGAGTACGTGCAAATAGACATATTCTCCATGTAGTTCCTAATATTGAGAAATTTCAATCTTTGCTACGATGTCTTAAACTCTGGGCAAAAAGACGAGGAGTTTATGGAAATTTGCTTGGTTATTTGGGAGGAGTTCATATGACAGTTCTTGCAGCTTATGTTTTTCAAAGACATCCTGATGCCACTTTAAACTCTCTAATTATGAACTTTTTTCAAACATTTGCATTTTGGCCCTGGCCGACTCCCGTAATGCTGCAGGAAGGAATGTTGCTAACAGCTCTTGATGCTATAGAAGCACGATCCTTCATGCCTATATGGCTGCCATCTAGTCCTTACGAGTTCTGCCATACTAATATAACTAAAAGCACTTTCTACCGAATCAGGTCTGAACTTCTTCGTGGGCATAATATGACAAGGGATCTTTTGATGCCAGATTTCGATTGGGATCATGTATTTGAGCCTTTCCCATACTCAAAAAGATACTTCCAATTTGTCAAGATTTACCTCTCTTCTCCTAATCATTATACACTTGGAGACTGGGTTGGTTGGATTAAGTCACGCTTTCGGGGTCTTCTCGTAATTCTGGAGGGTATTCTTGGATTTTGTGACCCCAACCCCACAGAATATGTTGATAGTGAGAAAACGGAGCCACATGTGGTTTTCTACTGGGGCTTGCAACATGTGAAGAATAATTTCATTGACATTGATTTGGTAAAGGGAGAGTTCATGAAAATTATCAACAATGGCTATGAAGGCTCTCCTGGGAGGATGGAGTTGTCCATTCTGTTAACTTCTCGGCTACCTAAGAAAGCATTGATGGTGGGGCTGTAA 1494 0.419 MEFESPTSRPIPSDVVFDPPPFPIIHPFLPPPPPLSTVLLPFPFNPSLFFVMDNQRSISLLQFMADEGLVPPPEEDEKRKNAIKKLKQIVSLWIKKVACQHQLPKHQIAVTSATILTYGSYGLGVHSSESDIDALCVAPFFASIAEDFFVVLHDMLKRSPEVSDIHCVKSAKVPLMRFKFDGISIDLPYARLNVLYVPENVDILNPFFMRNIDDTSWKSLSGVRANRHILHVVPNIEKFQSLLRCLKLWAKRRGVYGNLLGYLGGVHMTVLAAYVFQRHPDATLNSLIMNFFQTFAFWPWPTPVMLQEGMLLTALDAIEARSFMPIWLPSSPYEFCHTNITKSTFYRIRSELLRGHNMTRDLLMPDFDWDHVFEPFPYSKRYFQFVKIYLSSPNHYTLGDWVGWIKSRFRGLLVILEGILGFCDPNPTEYVDSEKTEPHVVFYWGLQHVKNNFIDIDLVKGEFMKIINNGYEGSPGRMELSILLTSRLPKKALMVGL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01786 497 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 376 478 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cca08g01786 497 PANTHER NUCLEAR POLY(A) POLYMERASE 3 42 492 - -
Cca08g01786 497 Gene3D Beta Polymerase, domain 2 71 227 IPR043519 -
Cca08g01786 497 Gene3D - 53 373 - -
Cca08g01786 497 Gene3D Poly(A) polymerase predicted RNA binding domain 378 482 - -
Cca08g01786 497 CDD NT_PAP_TUTase 78 193 - -
Cca08g01786 497 PANTHER POLY A POLYMERASE 42 492 - -
Cca08g01786 497 Pfam Poly(A) polymerase central domain 53 375 IPR007012 GO:0004652|GO:0043631
Cca08g01786 497 SUPERFAMILY PAP/OAS1 substrate-binding domain 234 375 - -
Cca08g01786 497 PIRSF PolyA_polymerase 50 492 IPR014492 GO:0004652|GO:0005634|GO:0043631
Cca08g01786 497 SUPERFAMILY Nucleotidyltransferase 43 230 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01786 Cca-Chr8 50101405 50106186 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01786 K14376 - cit:102610335 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01786 08 50101405 50106186 Cca08g01786 08 50101405 50106186 ECH