Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01785 ATGAGGAGAATCCCAAACTTGGTGTCCTCTTTTGCACTTCACATCATTCTCCTTGCTTCCACTTGTATTCCCTTCACACTCTCCCAACCGTCTGTCCCATGGAAGGAAGGGAATGGCGATTTGGCAGACCAAATATGCAAAAAGACACCCTTTTACGACCTTTGCAGCTCCATCCTGCACTCAAACCCTCTCAGTCCGAAACCTGATCTCAAAGGGGTGGCACTCTTGATGGTGAACAACATTCTGGCAAATGCAAGTGACACACTGAGTTACATTGAGGGGCTGATCAAGAGCACCTCAGACCGTGAGTTGGAGCAAGCCTTGGCCTTCTGTGCTGAGTCCTATATCCCTCTTGTCAAGTACATTCTCCCTCAAGCTGCTGATGCCATAAGCCAAGGCCGTTTTGGCTTTGCCAGTTACTGCATTTCTGATGCTCTCAAAGAAATCAATAGCTGTAACAAGAAATTCTCTGGCGCATCTCAGGCACCCTTAGGGGACAGAAACGACATTGTGCAGAAGCTCGTGGATGTGGCTTCTGCTATAATCAAATTGCTTCTTAAGGGATGA 567 0.4762 MRRIPNLVSSFALHIILLASTCIPFTLSQPSVPWKEGNGDLADQICKKTPFYDLCSSILHSNPLSPKPDLKGVALLMVNNILANASDTLSYIEGLIKSTSDRELEQALAFCAESYIPLVKYILPQAADAISQGRFGFASYCISDALKEINSCNKKFSGASQAPLGDRNDIVQKLVDVASAIIKLLLKG 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01785 188 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 185 IPR035513 -
Cca08g01785 188 Pfam Plant invertase/pectin methylesterase inhibitor 41 181 IPR006501 GO:0004857
Cca08g01785 188 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 15 188 - -
Cca08g01785 188 PANTHER PECTINESTERASE INHIBITOR-LIKE 15 188 - -
Cca08g01785 188 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 185 IPR006501 GO:0004857
Cca08g01785 188 CDD CIF_like 40 185 IPR034087 GO:0004857|GO:0043086
Cca08g01785 188 SMART PMEI_2 37 181 IPR006501 GO:0004857
Cca08g01785 188 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 186 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01785 Cca-Chr8 50078773 50079600 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01785 - - gmx:100527840 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01785 08 50078773 50079600 Cca08g01785 08 50078773 50079600 ECH