Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01765 ATGGCTCTTAGATTTTTCTGCACTTCAAATATCTCAACACAACATCATCGTTCTGCTAAAACTCTTGTTTCCTCTTCTCTCTCTCTAACTAACTCATGTATGTGGAATTCCACTCCTGCAAGAAACAGTAAGAACAAGTGTGCTACTGCTGAGAACGTTAAGAGTCTCGTGCTTCCTTCCATTTCATCTACTCCACTTGAGTCTCTCCACAGAGGCAACTGGGTCAAGCTCATTTGTGGTGCAAGCTTTGAGGATGTTGTTGATATCAGAAATCTCAGTCTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCTGCTGATGCATCGGTTGTTAGTGCTGTGAATGAAGGAATTGAAGCTGCAAGAAATATGGTATCTCTTAGAAGGCCGTGGGTGATGATAAGTGTCAATGATGATAAAGATCTTCATTTTCGAAAGGCTGAATTTGATCCAGAGGACTGTCCAGCAGACTGTTCAAGGCCTTGTGAAAATGTATGCCCTGCTAATGCAATATCATTCCAAGGGAAATCTACTTCAGGAATTTCGTATAATACTGAAACACCAAGACTACTAAAGGATGGAGTCATAACGGAACGCTGCTATGGCTGTGGTCGTTGTCTTCCAGTTTGCCCCTACGATAAAATAAGAGAGGTAACATATGTAAGAGATGCTTTTACAACTGCTGATCTCATCAAGAGAAATGATGTTGATGCTATGGAGATACATACAAGTGGGAGACAAAGTAATTTGTTCAAAGAACTCTGGAGCGCTCTAGGAGATTCAGTACGAAATTTGAGGCTTATAGCAGTTAGCTTACCTAATGTTGGTGATTCAACAATATCCTCTATGAACAAAATGTTCTCTATTATGAAACCCAACCTTCAAAGCTTCAACTTATGGCAGTTAGATGGTCGTCCAATGAGTGGAGACATTGGGAGAGGAGCAACTAAGGAATCAATTGCCTTTGCTGTTCAATTGGCTAAAGCAAAAGGAAGACCTCCTGGTTTTCTTCAACTGGCTGGGGGAACTAATGCTCACACAATTGATGGGTTGAAGAAAGAAGGACTCTTTCAAACAACTATTACTGGTAATGTATCCACTTTGTTACTTTGTATATTCTCTTGTTACTCACTCTTCTTTTCCATTGCATTTTAG 1161 0.4048 MALRFFCTSNISTQHHRSAKTLVSSSLSLTNSCMWNSTPARNSKNKCATAENVKSLVLPSISSTPLESLHRGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADASVVSAVNEGIEAARNMVSLRRPWVMISVNDDKDLHFRKAEFDPEDCPADCSRPCENVCPANAISFQGKSTSGISYNTETPRLLKDGVITERCYGCGRCLPVCPYDKIREVTYVRDAFTTADLIKRNDVDAMEIHTSGRQSNLFKELWSALGDSVRNLRLIAVSLPNVGDSTISSMNKMFSIMKPNLQSFNLWQLDGRPMSGDIGRGATKESIAFAVQLAKAKGRPPGFLQLAGGTNAHTIDGLKKEGLFQTTITGNVSTLLLCIFSCYSLFFSIAF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01765 386 Pfam Iron-Sulfur binding protein C terminal 232 363 IPR021039 -
Cca08g01765 386 Gene3D - 140 257 - -
Cca08g01765 386 SUPERFAMILY 4Fe-4S ferredoxins 137 228 - -
Cca08g01765 386 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER 49 218 - -
Cca08g01765 386 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 147 178 IPR017896 -
Cca08g01765 386 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 202 213 IPR017900 -
Cca08g01765 386 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 193 222 IPR017896 -
Cca08g01765 386 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED 49 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01765 Cca-Chr8 49780097 49784863 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01765 - - gmx:100804088 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01765 08 49780097 49784863 Cca08g01765 08 49780097 49784863 ECH