Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01759 ATGGCAGGTGCTAGGAGATTGGGCGTGGCCGTTGATTTCTCACCATACAGCATCGAAGCACTCCAATGGACGGTGGATAACGTCGTTAAAGAAGGGGACCACCTTATCCTTGTCACCGTTCGCCCCGAAGGGTGGAACTACGAGGACGGCGAGATCCAGCTCTGGAAAGATCAAGGCTCACCTCTCATACCTCTGGCTGAGTTCTCTGACCCTGCAGTCATGAAGAGGTACGGAGTGAAACCCGATCCCCAAACAATTGATATTGTCTCGGAGGCTGCGAAGCAAAAAGATATTGTGGTGGTAATAAAGATATATTGGGGAGATGCTCGTGAGAAGTTATGCGAAGCAATTGATCACGTTCCTCTAGATTACCTTACTGTGGGGAACAGAGGCCTTGGCAAGATCAAAAGGGCCATTATGGGCAGCGTCAGCAACTATGTGGTGAATAATGCCACGTGTCCTGTTACTGTGGTGAAGCACGCAGAACACCAACACTAA 498 0.498 MAGARRLGVAVDFSPYSIEALQWTVDNVVKEGDHLILVTVRPEGWNYEDGEIQLWKDQGSPLIPLAEFSDPAVMKRYGVKPDPQTIDIVSEAAKQKDIVVVIKIYWGDAREKLCEAIDHVPLDYLTVGNRGLGKIKRAIMGSVSNYVVNNATCPVTVVKHAEHQH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01759 165 PRINTS Universal stress protein signature 4 22 IPR006015 -
Cca08g01759 165 PRINTS Universal stress protein signature 119 131 IPR006015 -
Cca08g01759 165 PRINTS Universal stress protein signature 137 159 IPR006015 -
Cca08g01759 165 PANTHER IMP2'P 4 164 - -
Cca08g01759 165 CDD USP_Like 6 158 - -
Cca08g01759 165 Pfam Universal stress protein family 4 159 IPR006016 -
Cca08g01759 165 Gene3D HUPs 4 165 IPR014729 -
Cca08g01759 165 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01759 Cca-Chr8 49699138 49701000 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01759 - - gmx:100816534 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01759 08 49699138 49701000 Cca08g01759 08 49699138 49701000 ECH