Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01757 ATGGCCGACAAGTACAACCTCAAGAACCCCGCCGTCAAGCGGATCCTCCAGGAGGTCAAGGAGATGCACTCCAACCCTTCCGACGACTTCATGAGTCTCCCTCTCGAGGAAAATATATTTGAATGGCAATTTGCGATTAGAGGGCCTCGTGATACTGAATTTGAGGGTGGTATTTATCATGGACGGATCCAGTTGCCTTCAGAGTATCCATTCAAACCCCCTTCATATATGTTGTTGACACCTAATGGTCGTTTTGAGACTCAAACCAAGATTTGCTTGAGCATATCGAATCATCACCCTGAGCATTGGCAACCATCATGGAGTGTGAGGACTGCTTTAGTTGCACTGATTGCATTCATGCCTTCCAACCCAAATGGTGCATTGGGCTCATTAGACTACAATAAAGAAGAGAGGCGTACCTTGGCCGTCAAGTCTCGTGAAGCTCCTCCTAGATTTGGGACTCCTGAACGTCAAAAGCTGATTGATGAGATACACGAGTACATGCTAAGCAAGGCACCCCCTGTTCCCCAACCCAGCGCCACAGAGGCTTCTGAAGAGCACCCTAGAAACGAGGAGGCTGAGGATGAGGTCCAGGTTAATTCCCCGAATCGCGAGTCTTTACCAGCGGGAGAGGGGATTCCAGGTCAAGAAGGTGATGGAATTGTTGAAGAACAAGAAGTCCTTGTTGCAAATGCTAACCCTGCAGGAGTTGAAGTTCCAAGGGAGGTTCAATCAAGAGTTTCCAGGAATGAGGTGCTCCAAATGTCAGATACAAGGGTTCACAATCCTAGGCCAGAGCCCAGGGTCCAGAAACCTGATGATCGGTTGTTCACATTGGCGGCTATTGGACTTACTATTGCAATTGTCGTCCTTTTGCTCAAAAAGTTCATTAAATCTACCGAACATGGGGCACTTTTCTCAGATGGATCTTAA 933 0.477 MADKYNLKNPAVKRILQEVKEMHSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSYMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPSNPNGALGSLDYNKEERRTLAVKSREAPPRFGTPERQKLIDEIHEYMLSKAPPVPQPSATEASEEHPRNEEAEDEVQVNSPNRESLPAGEGIPGQEGDGIVEEQEVLVANANPAGVEVPREVQSRVSRNEVLQMSDTRVHNPRPEPRVQKPDDRLFTLAAIGLTIAIVVLLLKKFIKSTEHGALFSDGS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01757 310 MobiDBLite consensus disorder prediction 239 271 - -
Cca08g01757 310 SUPERFAMILY UBC-like 11 135 IPR016135 -
Cca08g01757 310 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Cca08g01757 310 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Cca08g01757 310 Gene3D Ubiquitin Conjugating Enzyme 2 172 IPR016135 -
Cca08g01757 310 MobiDBLite consensus disorder prediction 184 199 - -
Cca08g01757 310 SMART ubc_7 13 173 - -
Cca08g01757 310 CDD UBCc 12 127 IPR000608 -
Cca08g01757 310 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 310 - -
Cca08g01757 310 MobiDBLite consensus disorder prediction 171 218 - -
Cca08g01757 310 PANTHER BNAC01G21910D PROTEIN 6 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01757 Cca-Chr8 49681795 49685373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01757 1 308 Miscellaneous Gene Families AT3G17000 62.581 1.82e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01757 K10578 - gmx:100798396 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01757 08 49681795 49685373 Cca08g01757 08 49681795 49685373 ECH