Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01744 ATGTTCCTCTTCGACTGGTTCTATGGCATTCTCGCTTCCCTCGGTCTCTGGCAGAAAGAAGCCAAGATTCTCTTCCTCGGTCTCGATAATGCCGGCAAGACCACCCTTCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCACCAGCCCACCCAGCACCCCACTTCCGAAGAATTGAGCATTGGGAAAATCAAGTTCAAGGCTTTCGATTTGGGTGGCCATCAAGTTGCTCGTAGGGTTTGGAAAGACTACTATGCCAAGGGTTTCTCAATGTGGGGTTTGTTTCATACTTGGATGGGGTGGAACTTGTAG 312 0.4904 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKGFSMWGLFHTWMGWNL 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01744 103 Gene3D - 1 90 IPR027417 -
Cca08g01744 103 Pfam ADP-ribosylation factor family 8 87 IPR006689 GO:0003924|GO:0005525
Cca08g01744 103 SMART sar_sub_1 4 103 IPR006689 GO:0003924|GO:0005525
Cca08g01744 103 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Cca08g01744 103 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Cca08g01744 103 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Cca08g01744 103 PANTHER RE74312P 1 88 IPR006687 GO:0005525|GO:0006886
Cca08g01744 103 PANTHER BNAA09G15410D PROTEIN 1 88 - -
Cca08g01744 103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 86 IPR027417 -
Cca08g01744 103 ProSiteProfiles small GTPase SAR1 family profile. 14 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01744 Cca-Chr8 49418468 49418943 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01744 K07953 - gmx:100306687 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02715 11 54513937 54516666 Cca08g01744 08 49418468 49418943 PCT