Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01740 ATGAAAAAGGAAGCAAAAGCTCCACTTATTCCAACTCTGAAAAATCTCTTCCTCCTAATAAGTTACACCCTCGCTTTCCATTCCTTTCACTCCACATCACAGCCTGTCCAGAACCCTCTTTCTACATGCAACAACTCCTCTATATGTAACTCGCATTTGGTGTGCCAACCTACTCAACATAACCACACAAACAACAAAAGAGAAACACAAACAAACATGAGTCCTACTACGTGGTTTTTTGTGGTGTGTGTTGCGGCAGTGTTGGTGCTTGTGAATGGACAGTCATCAGTGAAGCCGTTGGTGAAGACGGTGAAGGGGAAGAAGGTGTGTGACAAAGGGTGGGAGTGCAAAGGTTGGTCTGCTTATTGCTGCAATGAGACTATCTCTGACTACTTCGAGACCTACCAGTTTGAGAACCTCTTCTCCAAGAGAAACTCTCCAGTGGCACATGCTGTTGGATTCTGGGACTACCGTTCTTTCATCACTGCTGCAGCACTGTATCAGCCTCTTGGCTTTGGCACCACTGGTGGAAAGACCAGTGGCATGAAGGAGGTCGCAGCTTTCCTTGGACATGTTGGAAGCAAGACCTCTTGTGGTTATGGGGTGGCTACTGGGGGACCCTTGGCCTGGGGCTTGTGCTACAACAAGGAATTGAGTCCTGATAAATTCTACTGCGATGACTACTACAAGTTAACCTACCCTTGCACTCCTGGCGCAGCATACTATGGTCGTGGCGCCATCCCACTTTACTGGAACTACAATTATGGAAAAGCTGGGGAAGCCTTGAAGGTGGATCTGTTGAACCATCCAGAATACATAGAACAAAATGCCACCCTAGCCTTCCATGCTGCAATATGGCAGTGGATGACCCCACCAGAGAAGCACCTACCTTCACCCCATGATGTGTTTGTTGGCAACTGGAAACCCACCAAGAATGACACATTGTCCAAAAGGGTACCTGGATTTGGTGCCACAATAAATTTGCTCTATGGGGAACAAACTTGTGGCCAGGGACCTGACAACGAGGCCATGAACAACATCGTTTCCCACTATCTTTATTACCTTGATCTCATGGGTGTTGGCAGAGAAGAGGCAGGGCCTAATGAGGTTCTCTCCTGTGCTGAACAAGCTGCTTTTAAGCCCTCTGGCCCACCATCTTCTGCCACAAATTGA 1173 0.4783 MKKEAKAPLIPTLKNLFLLISYTLAFHSFHSTSQPVQNPLSTCNNSSICNSHLVCQPTQHNHTNNKRETQTNMSPTTWFFVVCVAAVLVLVNGQSSVKPLVKTVKGKKVCDKGWECKGWSAYCCNETISDYFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAALYQPLGFGTTGGKTSGMKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKELSPDKFYCDDYYKLTYPCTPGAAYYGRGAIPLYWNYNYGKAGEALKVDLLNHPEYIEQNATLAFHAAIWQWMTPPEKHLPSPHDVFVGNWKPTKNDTLSKRVPGFGATINLLYGEQTCGQGPDNEAMNNIVSHYLYYLDLMGVGREEAGPNEVLSCAEQAAFKPSGPPSSATN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01740 390 Pfam Chitinase class I 136 363 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca08g01740 390 Gene3D - 136 379 - -
Cca08g01740 390 CDD chitinase_GH19 136 373 - -
Cca08g01740 390 PANTHER - 80 382 - -
Cca08g01740 390 PANTHER CHITINASE-RELATED 80 382 - -
Cca08g01740 390 PIRSF Endochitinase 64 380 IPR016283 GO:0004568|GO:0005975
Cca08g01740 390 PIRSF Endochitinase 11 77 IPR016283 GO:0004568|GO:0005975
Cca08g01740 390 SUPERFAMILY Lysozyme-like 128 379 IPR023346 -
Cca08g01740 390 Gene3D Endochitinase, domain 2 216 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01740 Cca-Chr8 49370251 49372772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01740 95 379 Glycoside Hydrolase AT3G16920 83.509 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01740 - - vra:106760177 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01740 08 49370251 49372772 Cca08g01740 08 49370251 49372772 ECH