Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01739 ATGGGTTGTCGAAACGACAAGAGGCAAGTGGTGGCCATTGTGGTAGTGTTGCTTAGTGTGACAGTGTCCTTGAGCGAAGGGAGGGTGCCCTTTGCATGCGACCCTCGTAACGGGGTCACGAGGGGGTTAAAGTTTTGCAGGACGAACGTGCCGATCCACGTGAGGGTGCAGGACCTCATAGCGAGGCTCTCATTGGCGGAGAAGATTAGGCTGGTGGTGAACAACGCCATCGCCGTGCCCAGGCTCGGCATCCAAGGCTACGAATGGTGGTCCGAGGCTCTGCACGGAGTCTCCAATGTGGGCCCCGGCACCAGGTTCGGTGGGCCCTTCCCTGCCGCCACCATGTTCCCTCAGGTCATCTCAACCGCTGCTTCCTTCAATCAGTCCCTCTGGCGCGAAATTGGACGGGTGGTGTCTGATGAAGCAAGAGCAATGTACAACGGTGGACAGGCTGGTTTGACGTATTGGAGTCCTAATGTGAACATTTTCCGTGACCCACGGTGGGGCCGCGGCCAAGAAACTCCCGGAGAAGACCCAACTTTGGCGGCAAAGTACGCCGCCAGCTATGTCCGAGGACTCCAGGGTGACGGCGCCGGAAACCGCCTTAAGGTTGCTGCTTGCTGCAAACACTACACTGCTTATGATCTTGATAACTGGAATGGTGTAGACAGATTTCATTTCAACGCTAAGGTGAGCAAGCAGGATTTGGAGGACACTTATGATGTACCATTTAAAGCATGCGTGCTGGAAGGGCAAGTGGCCAGTGTGATGTGCTCCTACAATCAGGTGAATGGCAAGCCCACGTGTGCTGATCCTGATCTCCTTCGCAACACCATCCGTGGCCAATGGCGCCTCAATGGGTACATTGTTTCGGACTGTGATTCAGTTGGAGTTTTCTATGACAACCAACACTACACAAGAACACCAGAAGAGGCAGCCGCAGAAGCAATTAAAGCGGGCCTGGACTTGGATTGTGGCCCATTCCTGGCAATCCACACCGATGCTGCCATTAGGAAGGGACTCATTTCGGAAAACGATCTTAACCTTGCCTTAGCCAACCTTATTACGGTCCAAATGAGATTGGGTATGTTCGACGGCGAACCATCGGCCCAACCATACGGAAACTTGGGCCCGAGAGACGTGTGTACCCCGGCCCATCAACAACTGGCCCTTGAAGCAGCTAGAGAGAGTATAGTGTTGTTACAAAACAAAGGAAACTCGCTACCACTATCCCCTACGCGACACCGTCTCGTAGGAGTTATTGGGCCCAATTCGGACGCTACTGTTACAATGATAGGGAACTATGCTGGATTGGCATGTGGTTATACGACCCCTGTGCAAGGGATAGCGAGGTATGTGAAGACCGCACATCAAGTGGGGTGTAGGAATGTGGCTTGTAGGGGGAACGAACTATTTGGAGCTGCGGAAACTGTAGCTAGGGAGGTTGATGCGACTGTGTTAGTAATGGGGCTTGACCAGTCCATAGAAGCGGAAACACGAGACAGGGTTGGGCTACTCTTACCAGGCTTTCAACAAGAGCTTGTGGGTAGGGTGGCCAGGGCCGCTAGGGGCCCAGTTATCCTGGTGATCATGTCTGGTGGCCCAGTTGATGTCTCCTTTGCCGTAAAGGATCCAAAGATTAGTGGCATCTTGTGGGCTGGTTATCCAGGGCAGGCTGGTGGAACTGCCATAGCTGATGTGATCTTTGGTACAAGTAACCCAGGAGGAAGGTTACCGATGACATGGTACCCAGAGAGTTACTTGGCTAAAGTGCCGATGACAAACATGGACATGAGAGCAAACCCAGCAACAGGGTACCCAGGAAGAACCTACAGATTCTACAAAGGCCCAGTAGTGTTTCCTTTTGGACACGGGCTAAGCTACTCAAGGTTCAGGCACACCTTAGCCCTTGCTCCAAAACAAGTCTCAGTGCTCCAAGCCTTGACAAACTCAACCCTTTCAAGCAAAGCAGTGAGGGTGAGTCACGCCAATTGCGATGACGAGGCATTGGAGATGGAGTTCCACGTTGACGTCCAAAACGAAGGCTCAATGGATGGGACCCACACCCTTCTCGTATTCTCGAAACCACCACCGGGAAAATGGGCCGCCATTAAACACTTGGTGGGCTTCCACAAGGCCCATGTTCCTGCGGGCTCCAACCAACGAGTCCAGGTTCGTGTTCATGTGTGCAAGCACTTATCCGTGGTGGACCAGTTTGGGATTCGAAGAATCCCAAGTGGTGAACATGAACTCCACATTGGAGATGTCAAACATTCCGTTTCTGTCCAAACTCTGCAACAAATCAAGCACTGA 2313 0.5266 MGCRNDKRQVVAIVVVLLSVTVSLSEGRVPFACDPRNGVTRGLKFCRTNVPIHVRVQDLIARLSLAEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTRFGGPFPAATMFPQVISTAASFNQSLWREIGRVVSDEARAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVRGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYDVPFKACVLEGQVASVMCSYNQVNGKPTCADPDLLRNTIRGQWRLNGYIVSDCDSVGVFYDNQHYTRTPEEAAAEAIKAGLDLDCGPFLAIHTDAAIRKGLISENDLNLALANLITVQMRLGMFDGEPSAQPYGNLGPRDVCTPAHQQLALEAARESIVLLQNKGNSLPLSPTRHRLVGVIGPNSDATVTMIGNYAGLACGYTTPVQGIARYVKTAHQVGCRNVACRGNELFGAAETVAREVDATVLVMGLDQSIEAETRDRVGLLLPGFQQELVGRVARAARGPVILVIMSGGPVDVSFAVKDPKISGILWAGYPGQAGGTAIADVIFGTSNPGGRLPMTWYPESYLAKVPMTNMDMRANPATGYPGRTYRFYKGPVVFPFGHGLSYSRFRHTLALAPKQVSVLQALTNSTLSSKAVRVSHANCDDEALEMEFHVDVQNEGSMDGTHTLLVFSKPPPGKWAAIKHLVGFHKAHVPAGSNQRVQVRVHVCKHLSVVDQFGIRRIPSGEHELHIGDVKHSVSVQTLQQIKH 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01739 770 Gene3D - 384 629 IPR036881 GO:0004553|GO:0005975
Cca08g01739 770 Pfam Glycosyl hydrolase family 3 C-terminal domain 398 628 IPR002772 GO:0004553|GO:0005975
Cca08g01739 770 Gene3D Immunoglobulins 648 770 IPR013783 -
Cca08g01739 770 Gene3D - 55 372 IPR036962 GO:0004553|GO:0005975
Cca08g01739 770 PANTHER SUGAR HYDROLASE-RELATED 7 764 IPR044993 GO:0009044|GO:0045493
Cca08g01739 770 PRINTS Glycosyl hydrolase family 3 signature 116 135 IPR001764 GO:0004553|GO:0005975
Cca08g01739 770 PRINTS Glycosyl hydrolase family 3 signature 204 220 IPR001764 GO:0004553|GO:0005975
Cca08g01739 770 PRINTS Glycosyl hydrolase family 3 signature 278 296 IPR001764 GO:0004553|GO:0005975
Cca08g01739 770 SUPERFAMILY (Trans)glycosidases 44 397 IPR017853 -
Cca08g01739 770 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 398 631 IPR036881 GO:0004553|GO:0005975
Cca08g01739 770 Pfam Fibronectin type III-like domain 691 755 IPR026891 -
Cca08g01739 770 PANTHER BETA-D-XYLOSIDASE 1 7 764 - -
Cca08g01739 770 Pfam Glycosyl hydrolase family 3 N terminal domain 111 327 IPR001764 GO:0004553|GO:0005975
Cca08g01739 770 SMART Fn3_like_2 688 757 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01739 Cca-Chr8 49345338 49351246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01739 1 763 Glycoside Hydrolase AT5G49360 71.392 0.0 1135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01739 - - gmx:100812823 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01739 08 49345338 49351246 Cca08g01739 08 49345338 49351246 ECH