Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01723 ATGGAGGCCCTCACTTTCACTGAGGAGTTTACTAGCACTGTCCAGGCAGGGAGGTTGTTCAAGGCTTTGATTCTTGATGCTCCTAACCTCATCCCCAAGCTGATGCCTGAAGCCATTAAGAATGTTCAACTGATTGAAGGGAATGGTGGCCCTGGAAGCATTCAGGAGATTACCATTGCTGAAGGTGATAAAATCAAAAGCTTGAAGCATAGAATTGATGCAATAGACCAAGAGAAATTGACATACAGTTACGCAGTTATTGAGGGGGATGCTGCACTGGAAAAGGTGGACGCAATTTCACATGAGATTAAGTTCGAGGCCACTGAAAAGGGAGGTTGCAAGACTAAGAATGTGAGCAAGTATCAGCCCAAACCAGGGGTTGATGTCAAAGAGGAGGATTTCAAGGCTGCAAGGGAGGAAGGCTTGGCTCTCCTCAAGGTGGTGGATGCCTATCTTGTGGCAAACCCAGAGGCCTATGCTTGA 483 0.47 MEALTFTEEFTSTVQAGRLFKALILDAPNLIPKLMPEAIKNVQLIEGNGGPGSIQEITIAEGDKIKSLKHRIDAIDQEKLTYSYAVIEGDAALEKVDAISHEIKFEATEKGGCKTKNVSKYQPKPGVDVKEEDFKAAREEGLALLKVVDAYLVANPEAYA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01723 160 CDD Bet_v1-like 5 152 - -
Cca08g01723 160 SUPERFAMILY Bet v1-like 4 159 - -
Cca08g01723 160 Pfam Pathogenesis-related protein Bet v 1 family 4 154 IPR000916 GO:0006952
Cca08g01723 160 PANTHER - 1 160 - -
Cca08g01723 160 Gene3D - 3 158 IPR023393 -
Cca08g01723 160 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 1 160 - -
Cca08g01723 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01723 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01723 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01723 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01723 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01723 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01723 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01723 Cca-Chr8 49116198 49117836 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01723 - - pvu:PHAVU_009G252400g 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01723 08 49116198 49117836 Cca08g01723 08 49116198 49117836 ECH