Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01722 ATGGGTGTTCACACTGAAACAAATGAGTACCCTTCTCCAATCTCTTCATCAAGGTTGTTTAAGGCGTTGGTTGTTGATGATTCCAACCTCATTCCAAAACTTCTGCCACATGCCGTGAAGAGCATTGAACTCATACAAGGCGATGGTGGGGCTGGAAGCATCAAGCAGCTTAACTTTATTGAAGGCAGCCAGGTGAAAAGTGTTAAGAACCGGATTGATGAGATCAACGAGGACACATTTACTTACAGTTACACATTGATTGAAGGTGAGTCATTGAAGGATAAGTTTGCATCCATTGCTCATGAGATTAAGTTTGAAGCAGCACCTGATGGTGGTAGCATAAGTAAGGTAACAAGCAAGTATTATCTTAATGGTGATGTTGAGATCAATGAAGAGGACATTAAGGCTAGCAAGGAGAAGGTCTTGGGCATTTACAAAGTTGTGGAAGCCTATCTCCTGCAGAACCCTGCTGTGTATGCTTGA 483 0.4244 MGVHTETNEYPSPISSSRLFKALVVDDSNLIPKLLPHAVKSIELIQGDGGAGSIKQLNFIEGSQVKSVKNRIDEINEDTFTYSYTLIEGESLKDKFASIAHEIKFEAAPDGGSISKVTSKYYLNGDVEINEEDIKASKEKVLGIYKVVEAYLLQNPAVYA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01722 160 PANTHER MAJOR ALLERGEN PRU AR 1-LIKE 1 160 - -
Cca08g01722 160 SUPERFAMILY Bet v1-like 3 159 - -
Cca08g01722 160 PANTHER - 1 160 - -
Cca08g01722 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01722 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01722 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01722 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01722 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01722 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01722 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01722 160 Pfam Pathogenesis-related protein Bet v 1 family 1 155 IPR000916 GO:0006952
Cca08g01722 160 Gene3D - 2 158 IPR023393 -
Cca08g01722 160 SMART Bet_v_1_2 1 155 IPR000916 GO:0006952
Cca08g01722 160 CDD Bet_v1-like 7 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01722 Cca-Chr8 49114535 49115396 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01722 - - gmx:100815099 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01722 08 49114535 49115396 Cca08g01722 08 49114535 49115396 ECH