Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01718 ATGTCATCTTTGAGTAGGGAATTGGTGTTCCTCATTCTTCAATTTCTCGATGAAGAGAAATTTAGAGACACTGTGCACAAGTTGGAGCAAGAATCGGGTTTGTTCTTCAATGTGAAGCATTTTGAAGAGAAAGTCCTGGCTGGAGAGTGGGATGATGTTGAGAAATACCTCACTGGGTTTACCAAAGTTGATGACAATCGATACTCCATGAAAATTTTCTTTGAGATTAGGAAGCAGAAGTATCTTGAAGCCTTGGACAGGAATGACAAAGTGAGAGCTGTTGAAATACTGGTGAATGATTTGAAAGCTTTTTCATCGTTTAACGAGGATTTATTCAAAGAGATAACACATCTTCTAACCCTTAACAATTTTAGGGAAAATGAACAGTTATCAAAGTATGGTGATACTAAATCAGCTCGAAATATAATGCTAATAGAGCTCAAGAAATTGATTGAAGCAAATCCTCTCTTTCGAGATAAGCTTATATTTCCTACGTTTAAGACATCAAGGTTGCGAACCTTGATTAATCAAAGTTTGAACTGGCAGCATCAACTGTGCAAGAACCCGAGGTCAAATCCAGACATCAAAACTTTATTTATTGACCATTCTTGTTCACCTACAAATGGATCTCGTGCAACTACTCCTGTCAACCTTCCTGTAGCAGCTGTTGCAAAGCCTTCATCTTATGTTCCACTTGGGGCACATATTGGGCCATTTACACCTGCCCCAGTTGCTTCTAATGCTAATGCTTTAGCAGGATGGATGATGAATGGGAATCCTTCCACTTCTTCTCAATTACCTGTAGTCGCTGCTTCCTCATTGTCTGGTCCCCCAAATCAAGTCTCTGTTTTGAAGCATGCAAGAACACCTAATGCTCTCGGAATGATGGATTATCAAAACAATGACCATGAGCCACTAATGAAACGGTTGCGAACTGCACAATCTGTTGATGAGGTTACATATCCTGCTCCACCTCAACAAGCTTCTTGCTTGTTTGATGACCTTCCAAGAACTGTTGTTTGTACATTACATCAGGGAGCAACAGTAACGAGCATGGATTTTCATCCTTCCTTTCACTCCGTTCTTACAGTTGGTTGTGCAAATGGTGAAATTTCACTTTGGGAAGTTGGTCAGAGAGAGAGGCTGATATCAAAGCCTTTCAAAATATGGAATACTTCTGCTTGTTCTGTCTTATTTCAGGCTGCATTTCTTAAAGAGTCATCTATATCTATCAGTCGTGTATCATGGAGTGCAGATGGGAATTTTATTGGGGTTGCTTTTACAAAACATTTGATTCATTTGTATGCCTATCAAGCACCTAATGACCTACAGCAGCGTTTAGAGATTGATGCTCATGTTGGTGGTGTCAATGACTTGGCATTTTCTAACCCAAACAAACAGCTATGCATTCTAACTTGTGGAGATGATAAGTTAATAAAGGTATGGGATTTGACTGGAAAGAAGCTCTTTAACTTTGAAGGTCATGCAGCACCTGTTTATTCTATTTGTCCTCATCAGAAGGAAAATATCCAGTTTATATTTTCAACTTCTGTTGATGGGAAAATCAAGGCCTGGTTATATGATGACATGGGCTCCAGGGTTGACTATGATGCTCCTGGACAATGGTGCACCACGATGCTCTATAGTGCTGATGGAAGTAGATTGTTCTCTTGTGGGACAAGTAAAGATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAGTGAAGGGGCACTAAAAAGAACATATTCTGGGTTTAGAAAGAAATTTTCTGGCATTGTGCAATTTGACACAACAAAAGGTCGCTTTTTGGCTGCTGGCGAAGATAACCAGATTAAGTTTTGGGATATGGATAATGTCAATGTTCTGACTAGTACAGATGCTGAGGGTGGTCTTCCTAGTCTTCCTCGATTGAGGTTCAATAAAGAAGGAAATCTGCTTGCTGTTTCTACAGCAGATGGTGGTTTGAAAGTCCTTTCTAATTCCGATGGCATCAAATACTTGAGGGCCATGGAAGCCCGGTCTTATGAAGCATCTAAAGCACCTTTTGAGACAAAGGTACCTGGCTCTTCGGTGGTTACAAATATCAGTCCACTCATCAATAAAATAGAACATATGGACCGAAACTCTCCTGCTGGACTGGCATCTACCCTTAATGGAGTTGATTCTATGCCTAGAGGCATGGAGAGGAAAAGAAGTTTGGATGATGTATCTGACAAATCTAAAGCTTGGGAATTTACAGAAATAGTTGATCCTGTTCAGTGTCGAACAGTTACTATGCCAGATAGTATGGATCCCACCACTAACAAGGTTGCTCGCCTTCTTTATACAAATTCTGGGGTTGGTCTTCTTGCTCTTGGATCGAAAGGGATTCAGAGGCTGTGGAAATGGAGCCGAAATGAACTGAATCCTAGTGGAAAGGCCACGGCAAGTGTTATTCCACAACATTGGCAACCAAATAGTGGTCTACTCATGACTAATGATGCCCCGGATAATTCTGAAGCAGCAGTTCCCTGCATAGCACTCTCAAAAAATGATTCCTATGTTATGTCTGCATGTGGAGGAAAAATTTCATTGTTCAACATGATGACATTTAAGGTGATGGCAACTTTTATGCCACCTCCCCCTATTTCAACCTTCCTTGCATTTCACCCACAAGATAATAATATCATTGCAATTGGAATGGAAGATTCAACAATTCATATTTACAATGTTAGGGTAGATGAGGTCAAATCTAAATTGAAGGGTCACCAAAAGCGCATTACTGGTTTAGCTTTTTCAGCCCAACTGAATATTTTGGTCTCATCAGGTGCTGATGCTCAGCTTTTCTTTTGGAGCATTGACTCATGGGATAAGAAGAAATCACTATCAATCCAAATGCCAGCTGGAAATGCAGCTGTTGGTGATACTCGAGTACAATTCCACATTGATCAAGTAAACTTGCTGGTATGCCATGAGACGCAGCTAGCAATATATGATGCTTCAAAAATGGAATTGGTTCGGCAGTGGGTGCCACAAGATGGGTTGTTTGGTTCCATATCATCAGCAACATATTCATGCAATAGCCAACTAGTTTATGCTGCTTTCACTGATGGAAATATTGGAGTATTTGATGCTGACACCCTCAGACTAAGATGCCGTATAGCTTCATCAGCATACCTACATCAGACCACATTAAACAGCCAAAATGTATACCCTATTGTTGTTACAGCACATCCACAGGAGCCAAATCAATTTGCAATTGGACTTTCTGATGGCTCAATTAAGGTTATTGAGCCCAGAGAGTGTGATGGGAGGTGGGGAATTAAAGCACGTGTTGATAGTGCGATGCAGCAGAATGGTAGGACAGCATCACCCTCCACCACAAAATAA 3369 0.4066 MSSLSRELVFLILQFLDEEKFRDTVHKLEQESGLFFNVKHFEEKVLAGEWDDVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRNDKVRAVEILVNDLKAFSSFNEDLFKEITHLLTLNNFRENEQLSKYGDTKSARNIMLIELKKLIEANPLFRDKLIFPTFKTSRLRTLINQSLNWQHQLCKNPRSNPDIKTLFIDHSCSPTNGSRATTPVNLPVAAVAKPSSYVPLGAHIGPFTPAPVASNANALAGWMMNGNPSTSSQLPVVAASSLSGPPNQVSVLKHARTPNALGMMDYQNNDHEPLMKRLRTAQSVDEVTYPAPPQQASCLFDDLPRTVVCTLHQGATVTSMDFHPSFHSVLTVGCANGEISLWEVGQRERLISKPFKIWNTSACSVLFQAAFLKESSISISRVSWSADGNFIGVAFTKHLIHLYAYQAPNDLQQRLEIDAHVGGVNDLAFSNPNKQLCILTCGDDKLIKVWDLTGKKLFNFEGHAAPVYSICPHQKENIQFIFSTSVDGKIKAWLYDDMGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGALKRTYSGFRKKFSGIVQFDTTKGRFLAAGEDNQIKFWDMDNVNVLTSTDAEGGLPSLPRLRFNKEGNLLAVSTADGGLKVLSNSDGIKYLRAMEARSYEASKAPFETKVPGSSVVTNISPLINKIEHMDRNSPAGLASTLNGVDSMPRGMERKRSLDDVSDKSKAWEFTEIVDPVQCRTVTMPDSMDPTTNKVARLLYTNSGVGLLALGSKGIQRLWKWSRNELNPSGKATASVIPQHWQPNSGLLMTNDAPDNSEAAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMATFMPPPPISTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSAQLNILVSSGADAQLFFWSIDSWDKKKSLSIQMPAGNAAVGDTRVQFHIDQVNLLVCHETQLAIYDASKMELVRQWVPQDGLFGSISSATYSCNSQLVYAAFTDGNIGVFDADTLRLRCRIASSAYLHQTTLNSQNVYPIVVTAHPQEPNQFAIGLSDGSIKVIEPRECDGRWGIKARVDSAMQQNGRTASPSTTK 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01718 1122 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Cca08g01718 1122 Pfam WD domain, G-beta repeat 912 945 IPR001680 GO:0005515
Cca08g01718 1122 SMART ctlh 34 92 IPR006595 -
Cca08g01718 1122 Gene3D - 319 576 IPR015943 GO:0005515
Cca08g01718 1122 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 913 948 - -
Cca08g01718 1122 ProSiteProfiles Trp-Asp (WD) repeats profile. 913 954 IPR001680 GO:0005515
Cca08g01718 1122 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Cca08g01718 1122 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 1121 - -
Cca08g01718 1122 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1121 IPR027728 GO:0006355
Cca08g01718 1122 SMART Lish 4 36 IPR006594 GO:0005515
Cca08g01718 1122 SUPERFAMILY WD40 repeat-like 970 1094 IPR036322 GO:0005515
Cca08g01718 1122 Gene3D - 755 964 IPR015943 GO:0005515
Cca08g01718 1122 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 453 950 IPR011047 -
Cca08g01718 1122 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Cca08g01718 1122 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 1051 1091 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 995 1037 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 442 483 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 575 615 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 336 375 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 618 659 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 819 860 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 485 526 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 529 572 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 863 903 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 906 945 IPR001680 GO:0005515
Cca08g01718 1122 SMART WD40_4 397 436 IPR001680 GO:0005515
Cca08g01718 1122 Gene3D - 580 681 IPR015943 GO:0005515
Cca08g01718 1122 MobiDBLite consensus disorder prediction 710 734 - -
Cca08g01718 1122 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 338 488 IPR011044 -
Cca08g01718 1122 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Cca08g01718 1122 Gene3D - 965 1112 IPR015943 GO:0005515
Cca08g01718 1122 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01718 Cca-Chr8 49079947 49089663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01718 430 643 Miscellaneous Gene Families AT5G08390 23.963 5.69e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01718 - - qsu:112005985 1765.74