Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01681 ATGATGAAATCACGACATGGAGCTAACATTTTCCATTCTTTGCATTCCCTCTCATCTTCATTCACACCTACAGATCACACTCTACTCCACCGAGTTCTCGAACGCTCTAGAGTCTCCATGGATCTCAGAACCGCCACTAAAACCCACGCAAGAGTTGTGGTACTTGGTTTCGCCACCTACCCTTCTCTTGTGGCGTCTCTCGTAGCAACCTATGCTCGCTGCCACCAACCCCACATTGCCCTTCACGTTTTCTCCAACGTTTTGGACCTCTTCAGCATGAATTTGGTGATTCAAAGTTTGGTGAAAGGTGGGCAATGTGATGTTGCCAAGAAGGTGTTTGTCAAAATGCCTGTTAGGGATGTGGTCACGTGGAACTCCATGATTGGTGGTTATGTCAGAAGCTCGCGCTTTTTTGATGCTTTGAGCCTCTTCCGGAGGATGCTGAGTGCCAAGGTTGAGCCTGATGGGTTTACCTTTGCTTCTGTGGCTACTGCGTGTGCTCGCCTTGGGGCTATTTGCAATGCCAAGTGGGTGCATGGTTTGATGGTTGAGAAGAGGGTTGAACTGAATTATATATTGAGTGCTGCGGTGATTGACATGTACGCCAAGTGTGGTAGGATTGATGTTTCAAGGCAGGTTTTTGAGGAGGTTGCACGTGATCATGTGTCGGTTTGGAATGCTATGATTAGTGGGTTGGCGATTCATGGGCTTGCGGTGGATGCAACTCTGGTCTTTTCAAGGATGGAGATGGAGAGTGTTTTGCCGGATTCTGTTACTTTTATTGGGATTCTGACTGCTTGTAGCCACTGTGGATTGGTTGAAGAAGGTCGCAAGTATTTTGATATGATGCAGCACCATTACATGATTCAGCCGCAGCTCGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGCAGGGCTCACGGAAGAGGCCTATGCTGTGATTAAGGTGATGCCTATGGAGCCTGATGTTGTTATTTGGAGAGCACTTTTGAGTGCTTGTAGAATCTACCGAAAGAAAGAACTTGGTGAAGTTGCCATTGCAAATATATCCCGCCTAGAGAGTGGAGACTTTGTGTTGTTGTCAAATATGTATTGCTCTTTAAAGAGCTGGGATAGTGCTGAGAGAGTGAGACAATTAATGAAAATGGGAGGTGTTCGGAAAAACCGTGGTAAAAGTTGGATTGAATTGGGGGGCAGCATTCACCAATTCAATGCTGCTGATCAGTCGCATGCTGAAATGAAATCAATTTACAGAGTGCTGGAAGGTTTGATCCAAAGAGCCAAGTTGGAGGGATTCACACCCTTGACGGATCTGGTTTTGATGGATGTTTCTGAAGAGGAAAAGGAGGAAAATTTAATGTTTCATAGTGAGAAGTTGGCCTTGGCCTATGGGATACTGAAAAGTAGCCCTGGAACAAAAATCAGGATTTCAAAAAACCTGCGTATCTGTCTAGACTGTCATAATTGGATTAAAATTGTGTCAAAAATATTAAACAGAGAGATAATTGTGAGGGATCGGATCCGTTTTCACCAATTTGAAGGTGGTGTTTGCTCTTGCAGAGACTACTGGTAG 1578 0.4512 MMKSRHGANIFHSLHSLSSSFTPTDHTLLHRVLERSRVSMDLRTATKTHARVVVLGFATYPSLVASLVATYARCHQPHIALHVFSNVLDLFSMNLVIQSLVKGGQCDVAKKVFVKMPVRDVVTWNSMIGGYVRSSRFFDALSLFRRMLSAKVEPDGFTFASVATACARLGAICNAKWVHGLMVEKRVELNYILSAAVIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAVDATLVFSRMEMESVLPDSVTFIGILTACSHCGLVEEGRKYFDMMQHHYMIQPQLEHYGTMVDLLGRAGLTEEAYAVIKVMPMEPDVVIWRALLSACRIYRKKELGEVAIANISRLESGDFVLLSNMYCSLKSWDSAERVRQLMKMGGVRKNRGKSWIELGGSIHQFNAADQSHAEMKSIYRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLMFHSEKLALAYGILKSSPGTKIRISKNLRICLDCHNWIKIVSKILNREIIVRDRIRFHQFEGGVCSCRDYW 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01681 525 Pfam E motif 338 397 IPR046848 -
Cca08g01681 525 Gene3D Tetratricopeptide repeat domain 54 175 IPR011990 GO:0005515
Cca08g01681 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 471 - -
Cca08g01681 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Cca08g01681 525 Pfam DYW family of nucleic acid deaminases 433 525 IPR032867 GO:0008270
Cca08g01681 525 Gene3D Tetratricopeptide repeat domain 197 418 IPR011990 GO:0005515
Cca08g01681 525 TIGRFAM PPR: pentatricopeptide repeat domain 122 155 IPR002885 -
Cca08g01681 525 TIGRFAM PPR: pentatricopeptide repeat domain 224 256 IPR002885 -
Cca08g01681 525 Pfam PPR repeat family 119 168 IPR002885 -
Cca08g01681 525 PANTHER OS07G0578800 PROTEIN-RELATED 20 471 IPR045215 GO:0003723|GO:0009451
Cca08g01681 525 Pfam PPR repeat 196 219 IPR002885 -
Cca08g01681 525 Pfam PPR repeat 295 320 IPR002885 -
Cca08g01681 525 Pfam PPR repeat 224 251 IPR002885 -
Cca08g01681 525 Pfam PPR repeat 258 284 IPR002885 -
Cca08g01681 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01681 Cca-Chr8 48533474 48535937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01681 94 525 Glycoside Hydrolase AT3G49170 38.724 2.08e-105 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01681 - - gmx:100788229 920.228