Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01680 ATGGAACCTTACAATTTTTGTTCCTCATTGGAAACATTGACACAACATGTCAACACTATCACTGATCTTATTATCTCACCTCATCACTGTTTTGCACTGCTTTTGGTTGCATTTCTAGCAACCCTCTACTTTGCATGCAGAAGAAAATCACCCATTTATTTGGTAGACTTCACCTGCTACTGTGCACCCAGTTCCTATAGGCTACCACTGGCCATGTTTGAAGAGAATCAACTTTATGATAACATGGATCCTGAGGCTGTTGCTTTCCAATGCAAGATCATGGCCAAGTCAGGATTCAGTGAGCAAACATCCATTTCTCCATCCCTTGCTCAGATACCTAAAGTAAAGGCTCTCACCTTTGCCCTAGAGGAGGCTGAAACAATAATGTGTTCAGTAATCAAAGACTTGTTTGAGAAACATAACATCAACCCTAAAGCCATTGACATACTCATCACCAATAGTAGTGTGTTTTGTCCCACCCCATCTCTTAGTGCCATGGTGGTTAACAAGTTCAGAATGAGGAGCAACATCATGAGTTTCAACCTGTCAGGTATGGGATGCAGTGCTGGAATCATATCAATGAGTCTGGCTAAGGACTTGTTGAGAGTTCATAGGAATTCATTGGCTTTGATAGTTAGCACAGAAACTCTTAGCCTAAATTGGTACACTGGCAAAGTCCCTTCTATGCTGCTATCTAATTGTCTATTTAGAATGGGTGGAGCAGCTATATTGATGTCTAGCAGGGTGCAAGATAAGCACAAGGCAAAGTATACACTGCAGCATATTGTCAGAACAATCACAGCACAGGATGGTCAATCTCATGGCTGTGTGTACCAACAAGGGGATCCAGAGAACAAGGAAGGTGTATCAATATCAAAGAACATAGTCAATGTGTCTGGTGATGCACTGAAGAAAAATATAGCTTCACTAGGACCATTGGTTCTGCCTTTGAGGGAGCAATTCCTATATTTGTTTTCCATTGTTTGTCGCAAGCTGTGGAGTGCAAGGAGAATAAGCATTTATACTCCAAATTTCAACCATGCTTTTGAGCATTTCTGCATACATTCAGGGGGAAGAGCCATCATACAAGCCGTGGAAAGAAACTTGAGGCTGAGGAAACAGGACGTGGAGCCGTCAACCATGACTCTTTATAGGTTTGGAAATGTTTCATCTTCTTCAATTTGGTATGAGCTGAGCTACATAGAAGCAAAAGGGAGGATGAAACGTGGGGATAGGGTGTGGCAAATTGCCTTTGGAAGTGGATTCAAGTGTAACAGTGCGGTTTGGAAGTGTGTGTGTGACGTGAAGCCAGACACTGCAACTGCATGGAGGGATACAATTCACTCTTACCCTGTGGATATCATGAGAACAAACTGA 1377 0.4234 MEPYNFCSSLETLTQHVNTITDLIISPHHCFALLLVAFLATLYFACRRKSPIYLVDFTCYCAPSSYRLPLAMFEENQLYDNMDPEAVAFQCKIMAKSGFSEQTSISPSLAQIPKVKALTFALEEAETIMCSVIKDLFEKHNINPKAIDILITNSSVFCPTPSLSAMVVNKFRMRSNIMSFNLSGMGCSAGIISMSLAKDLLRVHRNSLALIVSTETLSLNWYTGKVPSMLLSNCLFRMGGAAILMSSRVQDKHKAKYTLQHIVRTITAQDGQSHGCVYQQGDPENKEGVSISKNIVNVSGDALKKNIASLGPLVLPLREQFLYLFSIVCRKLWSARRISIYTPNFNHAFEHFCIHSGGRAIIQAVERNLRLRKQDVEPSTMTLYRFGNVSSSSIWYELSYIEAKGRMKRGDRVWQIAFGSGFKCNSAVWKCVCDVKPDTATAWRDTIHSYPVDIMRTN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01680 458 PANTHER 3-KETOACYL-COA SYNTHASE 20 455 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca08g01680 458 Gene3D - 71 431 IPR016039 GO:0016746
Cca08g01680 458 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 349 430 IPR013747 -
Cca08g01680 458 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 20 455 - -
Cca08g01680 458 SUPERFAMILY Thiolase-like 260 431 IPR016039 GO:0016746
Cca08g01680 458 SUPERFAMILY Thiolase-like 40 248 IPR016039 GO:0016746
Cca08g01680 458 PIRSF Very_long_ch_3-ktacl-CoA_syn 4 458 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca08g01680 458 Pfam FAE1/Type III polyketide synthase-like protein 46 332 IPR013601 GO:0006633|GO:0016020|GO:0016747
Cca08g01680 458 CDD CHS_like 33 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01680 Cca-Chr8 48529607 48531192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01680 4 452 Acyl Lipid Metabolism Gene Families AT1G71160 50.889 1.52e-165 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01680 K15397 - gmx:100783404 866.685