Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01678 ATGTTAGACCTTAAGTACATATGGGTGCTTGTGTCCATCAACAGGTTCATTGATGACACCTTGGAAGATGAGAGAACAAGGAGTGGTCTAAAACTGAGATGCACCTCCAAGTTGAGGATTCAAAAGCAGGAGTTTTTTGAATTCTCTGAGCAGTCAGTGTTGTCCAATCTTTACTGGGGCATTGACAGCATTGAAGCTGCAATTCAGGCTCAACAGCCAGAAGAAAGATCCTTCAGGCTGATGAATTCAGAACAAATGCTTCAGGTGCCAGCAATGCTTGATGAAGAAGAGGTCACAGCCACAGTTCCAAACCGTTACTTGGTATGCTGCTCCTACTTTTACCTCTCAGTGGTTAGGAAGCTGCAGGGTGATGAGTGGCAGGCAGCACTGCATTTTCTCCAAGCAGTGTTGGTGTCACCAAGGCTTGTTTGGACTGAATTTGCATCACAGCTTTGTGAAAGTCTTTTTCCACAGTCAAACATGAGCATGATGCAGGGAAACTGTAGCAGTAGGAGTTTGGAGTCTGTGTCCTCTGAGGATGGAATTGATGAGGCAATTAGGGAGGTGGCAAGGAGGTACAAGGAGTGTCTGGTGTATTACCAGGTCATGCTTTATGGAGAGACTCCATGGTGGCGAAGTTATTGCGGCAAACAATCAGCACGGTCTGTGGATGTAACAAACACTAGCTGTGTATCTCCAGCTTCAGTTCAACATGAACCAAGATTGAAAAGTTGTAATACGTATGAAAAGGTTCATCCACTTGATCCTCAAGATGTGCATTCAATGGCACAAGAGTCAAAACAATTCATGGATATTGCTGAATATGAAGGTCACAAGAAAGCCTCCAGCCAATTGAAAGCAGTTCAGTATTGCAGAAAGGAGGACCAAACAATTTCAAGCATTGAATACTTCAAAGATATGATGAAAGAAGCACACTCTAAAACACCTGTATCAGTAGATGCATGCTGTGAGAATTTTAGAGACAACAGGGACATGGAAAATGTGGATGACAGAAAAATTTATATACAAACCACAATAACAAAAGCAGATGATATACCACCAGAAATCTATAACTGGAAGCTACATCAACACATTCCAATGCAAGAACAGTTTGACAAAAGAAACATAATTAAGCTTGATTCTAGTACATTCAACAGGTCCATAGAAGATGTTGCTTTATCTATCTCAAAATACAGAGATAGAACAGGAAATACTATCTTAAATTGTCATGTAGAGGATGAATTAAATGAAGACACATCGCAGCCACTAAAATTGTTTGATCATGTAACATTTACATCTTCTTGCAAACATAGGCCCAGCCAGAAAAAAAATCATGAAGAAAGTTCCGAGACACAGAGATTATTTAGCCTAGGAAAGTTTGATGAAGTTTGTTCAAACTCCAGAAGATATTCCATGCGTGACTTGTCAGGATTGACTGAAAGACGAATTTTAGAACTGCAATATTCAGGGGTATTAGGAAAATGTGATGAAGAACACACTGTAGACGTTGCATCAATTTATGAGAGTTTGATTGGTTCATCAGGTGCTACTTATTCTTCCTTAAAGGATGTGATTTTGGATGAGCTGCTAATAGCTATCTCTACTTCCAAAGAGGAAAGAAAAATAAGGGCATCAGTATCTATTCTGACAACAATAATTTCAAGGAACAAGTCAATTATAGAAGATGTGAAGAAGAAAGGTTTAAGGCTATGTGATCTGGCAAGTGCTCTGAAGCAAAATGTCCATGAGGCAGCAATTCTTATCTATTTAATAAATCCATCACCTATAGATATAAAAACATTGGAACTTCTGCCAATATTAGTGGAGATTGTCTGCACTTCAAATAGTTACAAGAATAAGCCAGAGTCACTTCTTCTGACACCTCATGCAGCATCATTGATGATCATTGAAGAACTAGTAACTTCATTTGACTATGCCACAAATAACATGCATTTGGCCACAATCAGTTCTCCTCACGTTCTCAGTGGATTTCTAGAAGTTGCCAGAAATGATAATCTAGAAGAATTTTTCTCTCTGACTACCATTCTTATAAAATGCATGCAGTTTGATTCACAGTGCAGAAAATATGTGTCACAATTCACTCCATTGTCTCCCTTTATCCACCTTCTGCAGTCAGAAAGCACCCGCGCCAAATGCACAGCTCTTGAATTTTTTCATGAAATCCTTTGCATACCACGATCCTCAGCTATTAGTTTGCTGCAGCGTATACAGCAAGAAAGAAGCATCAATATTATGCAGACACTAATGCATTGTGCATACCAATTACAGCATGATCACCAGCTTTTAGCAGCAAATATTTTGCTTCAGTTGGACATATTGAACTCCCCTGATAAAGGCATGTTCAGAGAAGAAGCTGTGCAGATCATTCTAAGGGCAATGACATCTGAAGAAAGCTCAGAGCAGATATTATCTGCATCCATTCTATCAAATCTTGCTGGTACATATGCCTGGACAGGAGAATCATACACAGCTGCATGGTTGCTGAGAAAGACAGGCTTGACCTCTCTTTATCACCAGAATATGATAAGAAACTTCAACTGGTTGGATCAGAGTCTACAGGACACCAGCACAGATTTGTGGTGCAGTAAAATTGCCAAATTTATCATAAGCCTTGGGGATCCAGTCTTCCATACTTTAGAGAGGGTGCTAAGAAGCAAGATAAAAAGAGTTTCTAGAGACTGCCTTGTAGCCATTTCATGGCTTGGATGTCAAATATCAAAAAGCCCTGACAGCATCAGTTATTCAGCATCTGAGATTATACTAAGTGGAATTGAGCGGTTTCTGCATCCTGGGATGGAGTTGGAAGAAAGACTTCTAGCATGTATGTGCATGTTTAATTATGCCTCTGGGAAAGGTAATCAAAAGCTGATGCATTTCTCAGAAGGAGTAAAGGAATCACTAAGACGCCTTTCAAATGTAATTTGGATGGCTGAGGAATTACACAGAGTAGCCGATTTCTTGCTGCCAAACATATCACGTATTTCTTGCGTTCACACACAAATCCTCGAGGCAGGTTGCAGCTTCAGCTTAGCAGTTTGCTCCCTCATATACTTCAAGGGATTGCTGTTCAGTGGATATTCAGATGGATCAATCAAGGTGTGGGATATTAGGGGGCACTCAGCCAGTGTTGTATGGGACATCAAAGAGCACAAGAAGTCTGTGACATGCTTTTCACTCTATGAACCATCAGACAGCCTTTTAAGCGGATCCACGGATAAAACCATAAGGGTGTGGAAAATGATCCAGAGAAAGCTCGAATGTGTTGAAGTTATAGTATTGAAGGAACCGATTCATCATTTGCGCGCACATGGTGAAACAATTTTTGCAATCACCCAAAGCCATGGATTAAAGCTAGTTAATGAATCAAGAGTGATCAAAGATATTTTGAAAGGTAAGCATGCGAAGAGTATGACAGTGGCTCAAGGAAAGTTATACATTGGATGCACAGATTCAAGCATACAGGAGTATTCCACAACACACAACCGTGAACTAGAAATCAAACCCCCTACAAGGAGTTGGAGGAAGCAAAGTAAACCAATCAATGCAATTGTAGCATATAGAGACTGGCTCTATAGTGCAAATAAGCATGTTGAAGGCACAACATTCAAGGAATGGAAAAGAAATAAGAAATCCAAAGTTTCAATTCTTACGGACAAAGGAGATAACGTGGCGGCCATGGAAGTGGTGGAAGACTTCTTGTACCTAATCTCCAGCTCCTCACCAAATAACATTCAGATCTGGTTGAGGGGGGCACCAAGAAAGTTGGGGAGAATATCAGAAGGAAGCAAGATAACAAGCATCCTTGCAGCCAATGACATCATCTTTTGTGGTACTGAGACGGGACTAATCAAGGGCTGGATCCCTCTGTAA 3891 0.4043 MLDLKYIWVLVSINRFIDDTLEDERTRSGLKLRCTSKLRIQKQEFFEFSEQSVLSNLYWGIDSIEAAIQAQQPEERSFRLMNSEQMLQVPAMLDEEEVTATVPNRYLVCCSYFYLSVVRKLQGDEWQAALHFLQAVLVSPRLVWTEFASQLCESLFPQSNMSMMQGNCSSRSLESVSSEDGIDEAIREVARRYKECLVYYQVMLYGETPWWRSYCGKQSARSVDVTNTSCVSPASVQHEPRLKSCNTYEKVHPLDPQDVHSMAQESKQFMDIAEYEGHKKASSQLKAVQYCRKEDQTISSIEYFKDMMKEAHSKTPVSVDACCENFRDNRDMENVDDRKIYIQTTITKADDIPPEIYNWKLHQHIPMQEQFDKRNIIKLDSSTFNRSIEDVALSISKYRDRTGNTILNCHVEDELNEDTSQPLKLFDHVTFTSSCKHRPSQKKNHEESSETQRLFSLGKFDEVCSNSRRYSMRDLSGLTERRILELQYSGVLGKCDEEHTVDVASIYESLIGSSGATYSSLKDVILDELLIAISTSKEERKIRASVSILTTIISRNKSIIEDVKKKGLRLCDLASALKQNVHEAAILIYLINPSPIDIKTLELLPILVEIVCTSNSYKNKPESLLLTPHAASLMIIEELVTSFDYATNNMHLATISSPHVLSGFLEVARNDNLEEFFSLTTILIKCMQFDSQCRKYVSQFTPLSPFIHLLQSESTRAKCTALEFFHEILCIPRSSAISLLQRIQQERSINIMQTLMHCAYQLQHDHQLLAANILLQLDILNSPDKGMFREEAVQIILRAMTSEESSEQILSASILSNLAGTYAWTGESYTAAWLLRKTGLTSLYHQNMIRNFNWLDQSLQDTSTDLWCSKIAKFIISLGDPVFHTLERVLRSKIKRVSRDCLVAISWLGCQISKSPDSISYSASEIILSGIERFLHPGMELEERLLACMCMFNYASGKGNQKLMHFSEGVKESLRRLSNVIWMAEELHRVADFLLPNISRISCVHTQILEAGCSFSLAVCSLIYFKGLLFSGYSDGSIKVWDIRGHSASVVWDIKEHKKSVTCFSLYEPSDSLLSGSTDKTIRVWKMIQRKLECVEVIVLKEPIHHLRAHGETIFAITQSHGLKLVNESRVIKDILKGKHAKSMTVAQGKLYIGCTDSSIQEYSTTHNRELEIKPPTRSWRKQSKPINAIVAYRDWLYSANKHVEGTTFKEWKRNKKSKVSILTDKGDNVAAMEVVEDFLYLISSSSPNNIQIWLRGAPRKLGRISEGSKITSILAANDIIFCGTETGLIKGWIPL 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01678 1296 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1054 1087 - -
Cca08g01678 1296 PANTHER OS04G0584500 PROTEIN 7 1296 - -
Cca08g01678 1296 Gene3D - 591 989 IPR011989 -
Cca08g01678 1296 Gene3D - 990 1295 IPR015943 GO:0005515
Cca08g01678 1296 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 1296 - -
Cca08g01678 1296 ProSiteProfiles Trp-Asp (WD) repeats profile. 1054 1087 IPR001680 GO:0005515
Cca08g01678 1296 SMART WD40_4 1002 1042 IPR001680 GO:0005515
Cca08g01678 1296 SMART WD40_4 1216 1255 IPR001680 GO:0005515
Cca08g01678 1296 SMART WD40_4 1047 1086 IPR001680 GO:0005515
Cca08g01678 1296 ProSiteProfiles Trp-Asp (WD) repeats profile. 1028 1051 IPR001680 GO:0005515
Cca08g01678 1296 SUPERFAMILY WD40 repeat-like 1018 1293 IPR036322 GO:0005515
Cca08g01678 1296 SUPERFAMILY ARM repeat 590 997 IPR016024 -
Cca08g01678 1296 Pfam WD domain, G-beta repeat 1054 1086 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01678 Cca-Chr8 48503651 48512726 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01678 - - gmx:100782870 2338.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01678 08 48503651 48512726 Cca08g01678 08 48503651 48512726 ECH