Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01676 ATGGAAATGGAGGAAACAGTATCGCGCGTAGTCTCTGAGTTAGAGGAGCACCGTGGAAACCCTCAACCACCACCTCTCTCCGAACAAATCCTAACGGATCTTCAACTTCTCCTCCGGCACTCTCTCTCGGAGTCCCTATACGATGAACTCTCATCGAAAAACCTCTCTCCCTCCTCTCTCAACCCTCCCATCGCTTCCGCCATGGACTCTTCCCCACCGCACCACTCTCTCCTCGCTTCCGACGTCTTCCTCTCCCTCCTCCTCTCCCCAAACGCCCCCGTTTTCACCCTCTTCACCCCAATCTCCTTCCTCTCCTTCCTCCGCTCCCTGCGTCGCTCCTGCAAGGCCCACTCCCACTCCGGCCCGGCCCAACACGCCCCCCAGCCCCGCAAACGAAAGCGCGCGGGCCGGCCCCGCGCCAGGAATCCCCAAAACGACGACGATTCGCCCGACGCGGGCCCCCAACAGCACGACCCTGGGCTCCTCCTTCGCGTGCTGGAGAAGCTGGTTCGCGTCATGGACCTAATCCACCTCGATCGCTTCCCCGAGACTCTCAAGTCGTTGATCCAAACCGTGGCGGAAATCCCCGTGACGGCGCAAGACACGTGCGGGAGCGCGGCGCAGTATAGCAACCTGCTTGGACTCTGCTCGCGCGTTCTGAACGCGGTTCTCGAACCGGAGCACGGTGAGCCTTCCGACACTGCCGCGGAGGTGCTGAAGTCTCTGTGTTCGCTCGTTCTCATGGCGAAGTCGCAGGCGAGGACCTTCGCTCTTGGGTTCGTTACCAGCCTTGGTGGCAAGCGCGACGGGGTGAAGAAGGCGCTGGTTAATTTTCCGCGGTATTTGGCGGTGAAGGCGCCGGAGAAGGCCGAGCCGAGAGCTTTGGCGGTGGACTCCATCATGGAGGTTGTTAGAGTGGTGGAGGATGAGGAGCAAATCGCGTTCGTGAAGTACGTGGTGCAGATGGCTCAGGGGAAGTCGAGTCTTCGGCTTTTGGCGGTTGATTTGATTTTGAATTTGGTGATGTCGTTGAAGAATCCGTTGGGCGTGGAATCGTTGGATTCGGAGAGTGGTTTGAGTGAGGTGTGGGGAGTGTGGTGCTTGGAGGCGTTGGTGAAGCGGTGTTCGGATGTGAGTGGTGCGATTAGGGCGCGGGCTTTGTCGACTTTGGCGCAGCTTGTGGGGTTCCTTGGTCGTGGTGAGAGGACTAGTGTGGTTTTGAGGGAGTTTATGGGGTTTGGAAAGGGTGGTGATGGGAATGTTGAAGGTGGGATGAATGATATGCTGAGGAAGAGGTGTATGGATGATAAGGCTGCTGTAAGGAAAGCCGCATTGCTTCTGGTTACTAACTTGACTTCTCTTCTTGGAGGGGCGATTGATGAAGTGGTGCTCAAGACTATGGGCCTCGCTTGTTCTGATCCACTCATCAGCATGCGGAAAGCGGCAATTGCAGCTCTATCAGAGGCTTTCAGAACATTTTCTTCTGAAACAGTAATAACTGAGTGGCTACATTCGGTTCCACGTCTAATAATTGACAATGAATCAAGCATCCAAGAAGAATGTGAGAACATGTTTCAAGAACTTGTTTTGGACCGGATATCTATAGCTGCATCTGCTACCTCTTCATATAGTGAATTTTCCTCTAATAGAAAGATGAAAGGAAAAGGTATAGACAATGAGATGGAGATGCTTTTTCCTAACGGAATTTTGTATCTTCTGAGAGAAATTTGCAATGGAGAGGTGAGCCCTTGGGTGAAGAAAATTTGCACAAATTTGGGCAAAAAGAAGCGGATGAATCACAAAATTGTTAGTGCACTTCAAAATATAATCGGGGCATCGGAGTCTATCTGGCTGAGACACTCCATGCCTATAGAAAAGTGGACTGCTCCACCAGGTGCTTGGTTTCTTTTGTCAGAGGTGTCAACATTCCTTTCAAAAGCTATAGACTGGGAGTTTCTTCATCATCATTGGCAGCTTCTTGACAAACATGAAGTGGAGGGTGAGTTCAAAAGCCCATTTGTACAAAAGAATGCCTTTGCAGAGGAAGAAAGCATTGAATGCAATTCTGTTGCCTGGGCAAGTGACCGAGTTTTCCTCTTGCAAACGATTTCTAATGTTTCTGTTGAGCTGCCCCCTGAACCTGCAGCTGATTTGGCTCATAACTTGCTCAAACGGGTAGAACAATTCAACATGCATTCGACCGAGGTTGACGCTCATTTAAAAGCACTAAAAACATTGTGCAAGCGGAAAGCTTCAAATCTCGAACAGGCAGAAGCATTAGTCTTGAAATGGGTCCAACAAGTTCTCTCCAGGGCTTCTGATATAATAGAAAAGTTCATTTCAGAGAATTCAGAGCAAAATGCACAAGGTAGCTTCTTCACTCCTCCTAGAAGTGGGACTAGGAAAGGCAAGAAATCGGCAGCAATGTCCAAGTCATTGTCTAAAGCAGTTACAGCGATTTATACTGTCGGGACTTTAGTTATTGTTTGCCCATCTGCTGATATGAGCAATATAGTTCCTCTATTGCATACTATCATCACTTCTGGGAGTTCTGGTCCCAAATTAAATAAACTACCTGGCCCTGCAACTTCTTTGCAACAGGAAGCTCCTTCTTTTTATATTCAAGGGTGGCTTGCCATGGGCAAGCTTTGCCTAGCTGATGGGAAGCTAGCTAAGAATTATATTCCTCTGTTTGTACAGGAGCTTGAAAAGAGCGAATCCGCAGCTCTTCGCAATAACATTGTGGTCATGATGGCAGATTTTTGTGTCCGCTACACTGCTCTTGTTGACTGTTACATTGCGAAGATCACAAGGTGTCTGTTAGATCCTTGTGAACTTGTGAGAAGGCAAACTTTCATATTGCTATCCAGATTGTTGCAGAGGGACTACGTGAAATGGAGAGGAGTGCTATTTCTACGGTTCCTTTTGTCACTTGTTGACGAATCAGAAAAGATTAGGCAGCTTGCAGATTTTCTCTTTGGAAATATTTTGAAAGTCAAGTCCCCCCTTTTAGCATATAATAGTTTTGTTGAGGCTGTTTTTGTTCTGAATAACTGTCATGTCCATAATGGACATCGTGAGTCCCAGGGGTCACAAACGGAAAGGCAACTTTTTTCTGTCAGGGGTACTGATGAAAAGTCAAGGTCTAAAAGAATGCACATTTATATTTCTTTACTAAAACAAATGGCTCCAGAGCATCTTCTAGCAACCTTTGCCAAGTTATGTGCGGAAATTCTAGCTGCAGCTTCTGATGGTTTGCTAAATATAGAAGATGCAACTGGACAGTCTGTTCTTCAGGATGCTTTTCAAATTCTGGGCTGTAAAGAGATACGCATCCCATCCACTCGTGCATCATCTGATTCAGCAGATGTTGAGGAAGAAGGGGGAGAAAATGGATCTGCAGCTAGAGGAAAGGCTATAACTCAGGCTGTCAAGAAGGGCCTTATCCAAAATACAGTCCCCATCTTCATCGAGTTGAAACGTCTATTGGAAACCAAGAATAGTCCCCTCATAGGTTCTCTCATGGAGTGCCTCCGCGTCATTCTAAAGGACTACAAGAATGAGATTGATGACATATTGGTTGCTGATAAGCAACTGCAGAAAGAGCTTATTTATGATATTCAAAAGTATGAGGCAGCTAAAGCCAAAGCTACAGTTGCTGAGGCTGAGGGCACCAAGCCAAAATCAGGTTCAAATCAATCACCTGATGTTTCTAAGAACCTGACCAAGACACAAGGACAAACAGTTGGACAAAGTAAGAACAATAACAAGCTTCCAAGTGATTCAAGAGTTGCTTCAGCAATGGCAGATGCAGCAGCTGCAGCGACAGCTCGTTCTGTGCTTAGGGAAATAAACAAGGGGACGGGTACACCAACACTTGGCTCTCTGAATGTTCCTAAAGTCAAGTCTTGTACTGGTACGGGCAATTCCAAGCATGTTAAGCGTGTGGATGTCATACAATCTGTAATGAAAAGACAGTCTTTCGATTCTGATGAAGAGAACTAA 4005 0.4762 MEMEETVSRVVSELEEHRGNPQPPPLSEQILTDLQLLLRHSLSESLYDELSSKNLSPSSLNPPIASAMDSSPPHHSLLASDVFLSLLLSPNAPVFTLFTPISFLSFLRSLRRSCKAHSHSGPAQHAPQPRKRKRAGRPRARNPQNDDDSPDAGPQQHDPGLLLRVLEKLVRVMDLIHLDRFPETLKSLIQTVAEIPVTAQDTCGSAAQYSNLLGLCSRVLNAVLEPEHGEPSDTAAEVLKSLCSLVLMAKSQARTFALGFVTSLGGKRDGVKKALVNFPRYLAVKAPEKAEPRALAVDSIMEVVRVVEDEEQIAFVKYVVQMAQGKSSLRLLAVDLILNLVMSLKNPLGVESLDSESGLSEVWGVWCLEALVKRCSDVSGAIRARALSTLAQLVGFLGRGERTSVVLREFMGFGKGGDGNVEGGMNDMLRKRCMDDKAAVRKAALLLVTNLTSLLGGAIDEVVLKTMGLACSDPLISMRKAAIAALSEAFRTFSSETVITEWLHSVPRLIIDNESSIQEECENMFQELVLDRISIAASATSSYSEFSSNRKMKGKGIDNEMEMLFPNGILYLLREICNGEVSPWVKKICTNLGKKKRMNHKIVSALQNIIGASESIWLRHSMPIEKWTAPPGAWFLLSEVSTFLSKAIDWEFLHHHWQLLDKHEVEGEFKSPFVQKNAFAEEESIECNSVAWASDRVFLLQTISNVSVELPPEPAADLAHNLLKRVEQFNMHSTEVDAHLKALKTLCKRKASNLEQAEALVLKWVQQVLSRASDIIEKFISENSEQNAQGSFFTPPRSGTRKGKKSAAMSKSLSKAVTAIYTVGTLVIVCPSADMSNIVPLLHTIITSGSSGPKLNKLPGPATSLQQEAPSFYIQGWLAMGKLCLADGKLAKNYIPLFVQELEKSESAALRNNIVVMMADFCVRYTALVDCYIAKITRCLLDPCELVRRQTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRQLADFLFGNILKVKSPLLAYNSFVEAVFVLNNCHVHNGHRESQGSQTERQLFSVRGTDEKSRSKRMHIYISLLKQMAPEHLLATFAKLCAEILAAASDGLLNIEDATGQSVLQDAFQILGCKEIRIPSTRASSDSADVEEEGGENGSAARGKAITQAVKKGLIQNTVPIFIELKRLLETKNSPLIGSLMECLRVILKDYKNEIDDILVADKQLQKELIYDIQKYEAAKAKATVAEAEGTKPKSGSNQSPDVSKNLTKTQGQTVGQSKNNNKLPSDSRVASAMADAAAAATARSVLREINKGTGTPTLGSLNVPKVKSCTGTGNSKHVKRVDVIQSVMKRQSFDSDEEN 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01676 1334 MobiDBLite consensus disorder prediction 1220 1264 - -
Cca08g01676 1334 MobiDBLite consensus disorder prediction 117 158 - -
Cca08g01676 1334 SUPERFAMILY ARM repeat 323 996 IPR016024 -
Cca08g01676 1334 MobiDBLite consensus disorder prediction 1 16 - -
Cca08g01676 1334 Coils Coil 1182 1202 - -
Cca08g01676 1334 Coils Coil 740 760 - -
Cca08g01676 1334 MobiDBLite consensus disorder prediction 1116 1136 - -
Cca08g01676 1334 PANTHER CONDENSIN 4 1314 IPR026971 GO:0007076
Cca08g01676 1334 Gene3D - 309 532 IPR011989 -
Cca08g01676 1334 Pfam non-SMC mitotic condensation complex subunit 1 910 1087 IPR032682 -
Cca08g01676 1334 MobiDBLite consensus disorder prediction 1025 1044 - -
Cca08g01676 1334 MobiDBLite consensus disorder prediction 1 27 - -
Cca08g01676 1334 MobiDBLite consensus disorder prediction 1225 1262 - -
Cca08g01676 1334 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 4 1314 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01676 K11491 - gmx:100793666 2182.91