Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01675 ATGTTGGTTTACCAGGATCTCCTTACAGGTGACGAGCTTCTCTCTGACTCCTTCCGTTACAATGAGATTGAGAATGGAATATTGTGGGAAGTTGAGGGAAAGTGGGTTGTTAAAGGAGCAGTTGATGTAGACATTGGAGCCAACCCATCGGCTGAAGGTGGGGAAGATGAGGGTGTTGATGACCAGTCTGTGAAGGTTGTTGACATTGTTGATACATTCAGACTTCAGGAGCAACCTGCTTTCGATAAGAAGCAGTTTATTACCTTCATGAAGAGGTTTATCAAGAATTTGACCCCCAAGCTTGAAGGAGAGCAACAGGAGTTGTTTAAGAAGAACATTGAGGCAGCAACCAAATTCTTGCTCTCTAAGATTAAGGATCTTCAATTTTTTGTTGGTGAGAGCATGCATGATGATGGTTGCTTGGTCTTTGCCTACTACAAGGACGGTGCTGCTGATCCAACATTTCTGTACTTTGCACATGCCTTAAAGGAGGTTAAGTGCTGA 504 0.4345 MLVYQDLLTGDELLSDSFRYNEIENGILWEVEGKWVVKGAVDVDIGANPSAEGGEDEGVDDQSVKVVDIVDTFRLQEQPAFDKKQFITFMKRFIKNLTPKLEGEQQELFKKNIEAATKFLLSKIKDLQFFVGESMHDDGCLVFAYYKDGAADPTFLYFAHALKEVKC 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01675 167 SUPERFAMILY Mss4-like 1 167 IPR011057 -
Cca08g01675 167 ProSitePatterns Translationally controlled tumor protein (TCTP) domain signature 1. 45 55 IPR018103 -
Cca08g01675 167 PRINTS Translationally controlled tumour protein signature 1 20 IPR018105 -
Cca08g01675 167 PRINTS Translationally controlled tumour protein signature 46 57 IPR018105 -
Cca08g01675 167 PRINTS Translationally controlled tumour protein signature 59 78 IPR018105 -
Cca08g01675 167 PANTHER TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED 1 167 IPR018105 -
Cca08g01675 167 Pfam Translationally controlled tumour protein 1 163 IPR018105 -
Cca08g01675 167 ProSitePatterns Translationally controlled tumor protein (TCTP) domain signature 2. 124 146 IPR018103 -
Cca08g01675 167 Gene3D Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 1 167 IPR011323 -
Cca08g01675 167 ProSiteProfiles Translationally controlled tumor protein (TCTP) domain profile. 1 167 IPR034737 -
Cca08g01675 167 PANTHER TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOG 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01675 Cca-Chr8 48463049 48465024 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01675 - - gmx:100499679 316.235