Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01667 ATGCTGGAGCGGTGCCTGGGTCCCCGGCGCGTGCGCCAGATGCAGCGCGCGTGCCGCCACAGCACCGTGACCTTCCTCTGCCTCTTCCTCACGCTGGTCGTGCTCCGCGGCACCATCGGCGCCGGCAAGTTCGGCACGCCGGAGCAGGACTTCAACGAGATCCGGCACCACCTCTCCGCCGCCCGCGCGCGCCGCGTGCTGGAGGAATCGAAGCCCGAATCAAACCCTAACAGCAACGGCGATGCGAACTCCAACAACTACGCCACCTTCGATCTCTCGAAGATCCTGGTGGACGAGCCTCTCCAAAAcgacgaaaagcgcgacccaaacgcgccctacacgctgggccccaaaatctccgactgggacgagcagcgccgccagtggctccgcgcgaatccggactatccgaatttcatccggcccaacaaaccgcgtgtgcttttagtgaccggttcgtcgcccaaaccgtgcgaaaacccggtcggggaccactaccTTGTTAAATCGATTAAGAACAAGATTGACTATTGTAGAGTTCATGGGATTGAGGTTTTCTACAACATGGCTCTTTTGGATGCTGAGATGGCAGGGTTTTGGGCCAAGCTTCCTTTGATTCGGAAGCTTCTTTTGTCGCACCCTGAAGTGGAGTTCCTCTGGTGGATGGACAGTGATGCAATGTTCACCGACATGGCGTTTGAGGTGCCATGGGAGAGGAATTGTCAATGGTCTTTGGATATTCTTGATGCTTGGGCTCCAATGGGTCCCAAAGGGAAGATTAGGGATGAGGCAGGGAAAGTTCTCACTAGGGAGCTTAAGAATAGGCCTGTTTTTGAGGCTGATGATCAATCTGCTATGGTTTATTTGTTGGCCACTGGGAAGGAGAAATGGGGGGATAAGGTTTACCTTGAGAATGCTTATTACTTGCACGGCTATTGGGGGATTTTGGTGGATCGTTATGAGGAGATGATTGAGAATTATCACCCTGGGCTTGGGGATCATAGGTGGCCTTTGGTCACTCACTTTGTGGGGTGCAAGCCTTGTGGCAAGTTTGGGGATTATCCTGTGGAGAGGTGCTTGAAACAGATGGATAGGGCTTATAATTTTGGGGATAATCAGATTTTGCAGATGTATGGTTTCACTCATAAGTCCCTTGCTAGTCGTAGGGTGAAGAGGGTGAGGAATGATAGTAGTAATCCTATTGAGGTCAAGGATGAGCTTGGATTGCTTCACCCTGCTTTCAAAGCTATCAAGCTACCTTCTTCTTCATGA 1272 0.4347 MLERCLGPRRVRQMQRACRHSTVTFLCLFLTLVVLRGTIGAGKFGTPEQDFNEIRHHLSAARARRVLEESKPESNPNSNGDANSNNYATFDLSKILVDEPLQNDEKRDPNAPYTLGPKISDWDEQRRQWLRANPDYPNFIRPNKPRVLLVTGSSPKPCENPVGDHYLVKSIKNKIDYCRVHGIEVFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERNCQWSLDILDAWAPMGPKGKIRDEAGKVLTRELKNRPVFEADDQSAMVYLLATGKEKWGDKVYLENAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHKSLASRRVKRVRNDSSNPIEVKDELGLLHPAFKAIKLPSSS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01667 423 Pfam galactosyl transferase GMA12/MNN10 family 239 351 IPR008630 GO:0016021|GO:0016757
Cca08g01667 423 Pfam galactosyl transferase GMA12/MNN10 family 144 234 IPR008630 GO:0016021|GO:0016757
Cca08g01667 423 PANTHER BNACNNG19100D PROTEIN 239 421 - -
Cca08g01667 423 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 143 310 IPR029044 -
Cca08g01667 423 PANTHER BNACNNG19100D PROTEIN 4 239 - -
Cca08g01667 423 MobiDBLite consensus disorder prediction 66 86 - -
Cca08g01667 423 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 239 421 IPR008630 GO:0016021|GO:0016757
Cca08g01667 423 MobiDBLite consensus disorder prediction 72 86 - -
Cca08g01667 423 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 4 239 IPR008630 GO:0016021|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01667 Cca-Chr8 48390289 48391656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01667 1 423 Glycosyltransferase AT3G62720 69.281 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01667 K08238 - gmx:100818287 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01667 08 48390289 48391656 Cca08g01667 08 48390289 48391656 ECH