Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01666 ATGGCTCCCCCACACGAGACAAAGAAATCCCAAGCCAAACGAGCATTGCGTTCCTTAGCCATAGGCATTGCGGTTCCCGTCGCACTCACGCTAACCATAATCATCCTCTTCGGTTCGGGGCGCAGGTACCATCGTGTGTCCAAGCCCTTTTGGTTCACACCACTTTGGTTCATTCACTTAGCCACATTGGGCTCCTCTTTCTTCATGGGCCTCGCCGCTTGGCTCGTGTGGGCCGATGGTGGGTTTCAAGGAGAAACCGATGCAATGTCTCTATACATTTCTCATGTCTCTCTAAGCATCGTGTGGCACCCTCTTGTGCTCGTTATGCGTGCCTATTGGCTTGCCTTTCTTTCTGGCCTTGTGGACTTTGGGACCCTATTTTTTTGTTACTTGAGGTTTAGAAAGGTGAACCCTTTTGCTAAGGATCTAGCCAAACCCTGCTTGGTATGGGCTGCATATCTTTGTTTTGTTAACTTCAAACTAATGTTTCTTTGA 495 0.4869 MAPPHETKKSQAKRALRSLAIGIAVPVALTLTIIILFGSGRRYHRVSKPFWFTPLWFIHLATLGSSFFMGLAAWLVWADGGFQGETDAMSLYISHVSLSIVWHPLVLVMRAYWLAFLSGLVDFGTLFFCYLRFRKVNPFAKDLAKPCLVWAAYLCFVNFKLMFL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01666 164 PIRSF PBR 8 164 IPR004307 GO:0016021
Cca08g01666 164 PANTHER PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR 5 164 IPR004307 GO:0016021
Cca08g01666 164 CDD TSPO_MBR 21 159 IPR004307 GO:0016021
Cca08g01666 164 Pfam TspO/MBR family 31 163 IPR004307 GO:0016021
Cca08g01666 164 PANTHER TSPO/MBR FAMILY PROTEIN 5 164 - -
Cca08g01666 164 Gene3D TspO/MBR protein 13 164 IPR038330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01666 Cca-Chr8 48382808 48383446 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01666 K05770 - gmx:100790873 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01666 08 48382808 48383446 Cca08g01666 08 48382808 48383446 ECH