Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01662 ATGAGTCAGGAATCGTTCATATATAGCTTCGTGGCTCGTGGGACGATGGTGTTAGCTGAGTACACAGAGTTCACTGGAAACTTCCCTGCCATTGCAGCTCAGTGTCTCCAGAAGCTTCCCTCTTCCAACAACAAGTTCACCTACAACTGTGACCATCACACCTTTAATTTCCTTGTTGAAGATGGTTATGCGTACTGTGTTGTTGCCAAGGAATCTGTTAGCAAGCAGATTTCCATTGCTTTCCTTGAACGTGTCAAAGCTGACTTTAAAAAAAGATATGGCGGCGGAAAAGCAGATACAGCTATTGCCAAGAGTCTGAACAAAGAGTTTGGACCAGTTATGAAAGATCATATGAAGTATATCATCGATCATGCCCAGGAGATTGAAAAGCTAATTAAAGTGAAGGCTCAAGTTTCCGAAGTTAAGAGTATCATGTTAGAAAATATAGACAAGGCTATTGATAGAGGAGAAAATCTAACAATTCTTGCAGATAAGACAGAGACATTACGTTCACAGGCTCAAGATTTCAGAAAACAAGGAACACAAGTCCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTCTGGGAATTTTGTTGTTTTTGGTCTTGGTTATTTGGCTTTCTATTTGTGGTGGATTTGACTGTACAAACTAG 666 0.3994 MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEFGPVMKDHMKYIIDHAQEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTILADKTETLRSQAQDFRKQGTQVRRKMWYQNMKIKLVVLGILLFLVLVIWLSICGGFDCTN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01662 221 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Cca08g01662 221 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Cca08g01662 221 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Cca08g01662 221 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Cca08g01662 221 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Cca08g01662 221 CDD R-SNARE 129 188 - -
Cca08g01662 221 Gene3D Longin domain 1 126 - -
Cca08g01662 221 SUPERFAMILY SNARE fusion complex 126 192 - -
Cca08g01662 221 PANTHER SNARE PROTEINS 1 220 - -
Cca08g01662 221 SMART Longin_2 31 113 IPR010908 -
Cca08g01662 221 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 724 1 220 - -
Cca08g01662 221 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Cca08g01662 221 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Cca08g01662 221 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Cca08g01662 221 Gene3D - 127 214 - -
Cca08g01662 221 CDD Longin 7 120 IPR010908 -
Cca08g01662 221 Pfam Synaptobrevin 129 215 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01662 Cca-Chr8 48333963 48337596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01662 1 220 Miscellaneous Gene Families AT1G04760 68.182 2.29e-112 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01662 K08511 - gmx:100527252 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01662 08 48333963 48337596 Cca08g01662 08 48333963 48337596 ECH
Cca11g02782 11 55164345 55167381 Cca08g01662 08 48333963 48337596 PCT