Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01653 ATGTCCATGAGTGAGCGCAAGACTATTGACTTAGAGCAAGGATGGGATTTTATGCAGAAGGGCATTCTGAAGCTGAAGAACATTCTAGAGGGGCAGCCTGAGCCTCAGTTCAGCTCGGAGGACTACATGATGCTATACACGACCATATACAATATGTGTACGCAGAAGCCTCCTCATGACTATTCCCAACAACTGTATGACAAGTACAAGGAGTCATTTGAAGAGTACATCGTATCAACAGTATTACCTTCTTTGAGAGAGAAGCATGATGAATTTATGCTAAGAGAACTTGTGAAAAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGCTTCTTTCACTATTTGGATCGCTACTTTATTGCCCGAAGGTCACTTCCACCTCTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGTGAGAGATGCAGTGATTTCTCTTGTTGATCAAGAACGTGAAGGAGAGCAGATTGACCGAGCTCTATTGAAGAATGTTTTAGATATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCTGCCATGCTTAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCAAACTGGATTCTTGAAGATTCCTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGCCCATTACTTGCACTCTAGTAGTGAGCCAAAGTTATTAGAGAAAGTTCAACACGAACTTTTATCTGTATATGCAAACCAACTCCTTGAAAAAGAGCATTCCGGATGTCATGCATTACTTAGAGATGACAAGGTTGAAGACTTGTCAAGGATGTTCAGGCTCTTCTCTAAAATACCCAAAGGCTTAGAACCTGTTTCCAGTATATTTAAGCAGCATGTCACCACTGAAGGCATGGCATTAGTGAAGTTGGCTGAAGATGCAGTGAGTACCAAAAAGGCAGAGAAAAAGGACATTGTTGGTTTACAGGAGCAGGTTTTTGTTCGGAAGGTGATTGAGCTGCATGACAAGTACCTGGCATACGTGAATGATTGTTTCCAAAATCATACTCTTTTCCACAAGGCTCTTAAGGAGGCTTTTGAGATCTTTTGCAACAAGGGTGTTGCTGGAAGCTCAAGTGCAGAACTGCTTGCTACTTTCTGTGATAATATTCTCAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTTGTCAAGTTGCTTGCATATATCAGCGACAAAGATCTTTTTGCCGAATTTTATAGAAAGAAGCTTGCCCGAAGACTCCTTTTTGACAAGAGTGCCAATGATGACCATGAGAGAAGTATTCTGACAAAACTGAAGCAACAATGTGGTGGTCAATTTACCTCGAAGATGGAAGGAATGGTTACAGATTTGACACTTGCAAAGGAGAACCAAACAAGCTTTGAGGAGTATTTAAGTAATAATCCTAATGCAGACCCTGGAATAGATTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTCGACCTCAATCTTCCAGCTGAAATGGTTAGATGCGTCGAAGTTTTCAAGGAATTTTATCAAACAAAAACTAAGCACAGAAAACTTACTTGGATTTATTCCTTGGGAACCTGCAACATAAGTGGGAAATTTGATCCAAAAACTGTGGAGCTGATTGTAACAACTTACCAGGCTTCAGCATTGCTTCTATTTAATTCCTCAGATAGGCTGAGTTATTCGGAGATAATGACTCAGTTAAACTTATCTGACGATGATGTTATTAGACTGCTTCATTCCTTGTCATGTGCCAAGTACAAGATTCTTATAAAGGAACCAAACACAAAATCAATATCTACTACTGATTATTTTGAATTTAATTCAAAATTTACAGACAAAATGAGGAGAATCAAGATTCCCCTTCCTCCCGTTGATGAGAAGAAAAAGGTTATTGAGGATGTTGATAAGGACAGAAGATATGCTATTGATGCCTCAATCGTGCGTATTATGAAAAGTCGGAAAGTTTTAAATTACCAACAGTTAGTAATGGAGTGTGTTGAGCAGTTAGGACGCATGTTTAAGCCTGATGTGAAGGCAATTAAGAAGCGGATTGAAGATTTGATCTCTCGAGACTACTTGGAAAGAGACAAAGACAATGCGAATTTGTTCAGGTACTTGGCGTGA 2235 0.3946 MSMSERKTIDLEQGWDFMQKGILKLKNILEGQPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYKESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLVDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPKGLEPVSSIFKQHVTTEGMALVKLAEDAVSTKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEIFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFDPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILIKEPNTKSISTTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLNYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANLFRYLA 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01653 744 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Cca08g01653 744 Gene3D Cullin Repeats 3 141 - -
Cca08g01653 744 Pfam Cullin family 28 647 IPR001373 GO:0006511|GO:0031625
Cca08g01653 744 Gene3D Cullin Repeats 390 503 - -
Cca08g01653 744 SMART cul_2 420 569 IPR016158 -
Cca08g01653 744 PANTHER CULLIN 3B 2 743 - -
Cca08g01653 744 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Cca08g01653 744 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Cca08g01653 744 PANTHER CULLIN 2 743 IPR045093 -
Cca08g01653 744 SUPERFAMILY "Winged helix" DNA-binding domain 659 744 IPR036390 -
Cca08g01653 744 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Cca08g01653 744 Gene3D Cullin Repeats 142 264 - -
Cca08g01653 744 Gene3D Cullin; Chain C, Domain 2 507 659 - -
Cca08g01653 744 Gene3D - 660 744 IPR036388 -
Cca08g01653 744 Gene3D Cullin Repeats 267 389 - -
Cca08g01653 744 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01653 Cca-Chr8 48073821 48082749 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01653 K03347 - gmx:100784626 1462.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01653 08 48073821 48082749 Cca08g01653 08 48073821 48082749 ECH
Cca11g02792 11 55271157 55279736 Cca08g01653 08 48073821 48082749 PCT