Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01647 ATGGATCCGAGAACTAATGTCACAGAGGAGGATTTGAACCGTTTTAGGTATTCTGTCTATGAAAATTTCAACAAAGTTCAAAAGCTTGAGGAGCAAATTACTGAGGTTGAACAATTCTACCGTTCCATTAATGATCAAGTCAACAATGTCAAAGACAAAGGCCGGGAAAAACATGTTATTGGCACTAAAAGGTCAATGCAAGGTGCATCAAGTAGGGAAACTAATTCTTCAAAAACAATGCAAGAGGTTAAGCGTCAGTTTTCTGTAATATTGCATCAGGCAAAATCAATAATGATACATTTTGTTTCTTCTCAGATAACTCAGCATAAATGGGCTTGGCCCTTCATGGAGCCTGTAGATGTTGAAGGTCTTGGGCTGCATGACTATAATGAGATTATTGAAAAGCCTATGGATTTCAGTACGGTAAAAAGAAAAATGGATTCGAAGGATGGTTCTGGTTATCAGAACGTGCGTGAGATATATGCTGATGTCAGGTTGATTTTTAAGAATGCAATGAAATACAACGATGAAAAACATGACATCCACACTATGGCAAAGACATTGCTGGAAAAATTTGAGAAGAAATGGTTGCAGCTATTGCCTAAAGTTGCTCAGGCGGAAAATGAACAAGTGAAGGAAGAAGCACGGGTGCAGTTGGAAATGAAGCTTGCTAGAGAGGCTTCTTATGCCAATACGGCAAAGGATATAAGCCTTGCGCTGTGCAATATTGATGCCACCTTAGAGAATTTCAAAGAAATGGTGATTCAAAAGTGCAGGAAAATATCAACTCATGAGAAAGTGACACTTATGAGGTCTCTCCCTAGACTTTCTCTTGAAAACCTCTCCAAGGCAATGCAGATAATTTCTGAGAATGACCCTACCTTCCAACCTTATGCTCAAGAAGTGAACCTTGACCTTGATCTTCAGAGTGACTACACAGTGTGGAGACTAAACGTTTTTGTCAGAAAAGCACTGAAAGAGCAGGAAATAAATGCTGAAGAGATACCTGTTAACCACAATGACTACAAAGAGGACAAGAAAAACACCACCAAAAGGAGGAAAGTGTGA 1068 0.3923 MDPRTNVTEEDLNRFRYSVYENFNKVQKLEEQITEVEQFYRSINDQVNNVKDKGREKHVIGTKRSMQGASSRETNSSKTMQEVKRQFSVILHQAKSIMIHFVSSQITQHKWAWPFMEPVDVEGLGLHDYNEIIEKPMDFSTVKRKMDSKDGSGYQNVREIYADVRLIFKNAMKYNDEKHDIHTMAKTLLEKFEKKWLQLLPKVAQAENEQVKEEARVQLEMKLAREASYANTAKDISLALCNIDATLENFKEMVIQKCRKISTHEKVTLMRSLPRLSLENLSKAMQIISENDPTFQPYAQEVNLDLDLQSDYTVWRLNVFVRKALKEQEINAEEIPVNHNDYKEDKKNTTKRRKV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01647 355 PANTHER TRANSCRIPTION FACTOR GTE1-LIKE ISOFORM X1 6 354 IPR017413 GO:0005634|GO:0006355
Cca08g01647 355 Pfam Bromodomain extra-terminal - transcription regulation 260 323 IPR027353 -
Cca08g01647 355 ProSiteProfiles Bromodomain profile. 107 182 IPR001487 GO:0005515
Cca08g01647 355 ProSiteProfiles NET domain profile. 251 332 IPR027353 -
Cca08g01647 355 PANTHER OSJNBA0053K19.4 PROTEIN 6 354 - -
Cca08g01647 355 SMART bromo_6 88 201 IPR001487 GO:0005515
Cca08g01647 355 Pfam Bromodomain 103 186 IPR001487 GO:0005515
Cca08g01647 355 PRINTS Bromodomain signature 126 142 IPR001487 GO:0005515
Cca08g01647 355 PRINTS Bromodomain signature 110 123 IPR001487 GO:0005515
Cca08g01647 355 PRINTS Bromodomain signature 163 182 IPR001487 GO:0005515
Cca08g01647 355 Gene3D - 53 220 IPR036427 GO:0005515
Cca08g01647 355 SUPERFAMILY Bromodomain 79 203 IPR036427 GO:0005515
Cca08g01647 355 Coils Coil 26 46 - -
Cca08g01647 355 Gene3D - 255 330 IPR038336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01647 Cca-Chr8 48000268 48005173 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01647 - - gmx:100795037 468.388