Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01644 ATGACCCCTCCTAGAGTCAATAACAGTATCCGTGAAATTCAATTTGTTCATCAAGAGGGTGGACATGCAAATCTACCTTGTCTCATGAACAACACAAGAATGCAGCTGCATACAGATCAAAAGTCTAGCTATAACAAGTGGTACATGCGGCTTCTGGTGGTTAATTATATGTGTCTCTTTGTGGGGTCACTTTCTTCTAGTTTGTTATCTAAATACTATTTCATTCACAAAGGCTCAAGCAAATGGGTCTCAACTTGGGTTCAAACTCTTGGCTTTCCTCTCTTGACGATCCCAATTTTTCTCCCTTATCTCCTTAAATTCACTAAGAGGATCCCCTTCTCTGATTTCACTCCAAAGATGTTACTCATGTCTGTTTCAATAGGTGTTATGCTAGGATTTAACAATCTTTTCTTCTCATGGGGAAATTCATATCTTCCGGTTTCAACCTCAGCCCTTCTGCTATCTTCCCAACTGATTTTCAACCTTCTTTTCTCTGTCATCATTGTGAAACAGAAAATAACATTCTCAAACGTTAACTGTGTCATCCTTCTCACCTTAAGCTCCATCCTCCTAGCTTTAGACTCTAGCCAAGAGAGGCCACAAGGGATAACTAAAAAGAACTACTTCATTGGATTCTTTTGCACCATTGGTGCAGGCTTGATGTTTGCCTTGTATTTGCCAGTGATGCAGAGGGTTTACGAGAAGGTTTATTGCTATGGAGTGGTGATGGAAATGCAGGTTATCATGGAGGCTGCAGCAACAGCATTGGCCACAGTTGGAATGGCATGCGAGGGTGGATTCTCCAAGATGAAGGAAGAGAGCCAAACGGTGTTTGATAAGGGTTCAAAAGTTTATTGGGTGACTGTGATGGGAAATGTGGTGACGTGGCAGCTGTGTTTTATGGGAACTGCAGGAATGGTGTTCTTGACATGTTCATTGACAGGGGGGATTTGCATGACAGCGTTGTTGTCCATGAATGTGTTGGGAGGGGTTGTAGTCTTCGGAGACAACTTTGGTGGTTTCAAAGCTGTGTCCACTCTTCTCTGCATTTGGGGCTTCTGCTCTTATGTTTATGGCATCTACAAGTTCAAACACACGGTGGAAGTGGAACAACACATATCTCCTACCAGGAACAGTAGTAATGGTTCATCCACAGAGATGATCCACATCCTGGAACGTGGTGCAACTTATTGA 1194 0.4271 MTPPRVNNSIREIQFVHQEGGHANLPCLMNNTRMQLHTDQKSSYNKWYMRLLVVNYMCLFVGSLSSSLLSKYYFIHKGSSKWVSTWVQTLGFPLLTIPIFLPYLLKFTKRIPFSDFTPKMLLMSVSIGVMLGFNNLFFSWGNSYLPVSTSALLLSSQLIFNLLFSVIIVKQKITFSNVNCVILLTLSSILLALDSSQERPQGITKKNYFIGFFCTIGAGLMFALYLPVMQRVYEKVYCYGVVMEMQVIMEAAATALATVGMACEGGFSKMKEESQTVFDKGSKVYWVTVMGNVVTWQLCFMGTAGMVFLTCSLTGGICMTALLSMNVLGGVVVFGDNFGGFKAVSTLLCIWGFCSYVYGIYKFKHTVEVEQHISPTRNSSNGSSTEMIHILERGATY 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01644 397 PANTHER TRIOSE-PHOSPHATE TRANSPORTER FAMILY PROTEIN 26 373 - -
Cca08g01644 397 Pfam Purine nucleobase transmembrane transport 51 363 - -
Cca08g01644 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 98 197 - -
Cca08g01644 397 PANTHER OS09G0467300 PROTEIN-RELATED 26 373 IPR030182 GO:0015211|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01644 Cca-Chr8 47958133 47959523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01644 29 359 Organic Solute Cotransporters AT1G30840 61.721 2.26e-138 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01644 - - gmx:100803560 549.28