Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01643 ATGGCGGCCACTTCGCAAACCCCAATTCAACGTCACAGTTTCAGCACTCCTCAGAACGAATCAAACGGCACTGAATCCTTTGATCAACAAGGCAAGGAAGAGTCACCTCCAAATCTCTCTTCGGACATGGACAACAGCAATGAACTACGTCATGATGAAGATCAGAAGTCCATGACTAACCGTAGGTACATGCCCTTGTTGGTTGTTAATTATCTTATGCTGTTTGCGGGTTCTCTCTCATCGAGTTTACTCTCCAAATTCTATTTCATACACAAGGGCTCAAGCAAGTGGGTCTCCACTTGGGTTCAGTGTGCTGGTTTTCCTCTTTTGCTCATCCCAATTCTCCTACCATGTTTCCTAAGTGCCTCTCAGAGGAAGCCCTTCACTGATTTCACACCAAAAACGTTCTTGTATTCAATTTTTGTTGGTCTCATGTTAGGGTTAAATAATCTTTTGATCTCATGGGGGGTAGCATATCTCCCAGTTTCAACCTCGGCACTTCTCTTATCCTCTCAGCTAGTTTTCACTCTTGTTCTCTCTGCCATCATTGTGAAGCAAAAAATAAACTTTTCAAATCTCAATTGTGTGATCCTCATAACCCTAAGCTCCATCATCCTAGGCTTGGATTCCAGCAACCAGAGGCCACAAGGGCTCACTCGAAGAAACTACTTCATTGGTTTCTTCTGCACCGTTGGTGCAGGCTTGTTGTTTTCCTTGTATCTCCCAGTGATGGAGAAGATTTATAGGAACGTGCGTTCCTACCAATTGGTGATGGAGATTCAGTTGATCATGGAGATTGCAGCAACAGTGTTGGCTACCACAGGCATGGCTTGGGATGGAGGGTTTTCTGAAATGAAGGAAGAGGCTGAGAGGGTTTTTGACATGGGGCCCACAGTTTATTGGGTGACTATTGTTGCAACTGTGGTGACTTGGCAGTGTTGCTTCATGGGAACTGCAGGGATGGTGTTTCTGACATCTTCACTAACCGGAGGGATTTGCAGCACAGCATTGTTGTCCATGAATGTGTTGGGAGGGGTTGTGGTTTATCGAGATTCCTTTGGAGGTTACAAGGCAGTGTCAACTGTTTTGTGCATTTGGGGATTCTGCTCTTATGTCTTTGGCATGTACATGAAAACCAAGCTAGGAAATGCTCAAAGGAGGAACAACAACAGTAGTGGACCTTTCTCAGAGTTTATCCCTTTCGGAAGTCGTGATGAGAATTGTTAA 1227 0.4474 MAATSQTPIQRHSFSTPQNESNGTESFDQQGKEESPPNLSSDMDNSNELRHDEDQKSMTNRRYMPLLVVNYLMLFAGSLSSSLLSKFYFIHKGSSKWVSTWVQCAGFPLLLIPILLPCFLSASQRKPFTDFTPKTFLYSIFVGLMLGLNNLLISWGVAYLPVSTSALLLSSQLVFTLVLSAIIVKQKINFSNLNCVILITLSSIILGLDSSNQRPQGLTRRNYFIGFFCTVGAGLLFSLYLPVMEKIYRNVRSYQLVMEIQLIMEIAATVLATTGMAWDGGFSEMKEEAERVFDMGPTVYWVTIVATVVTWQCCFMGTAGMVFLTSSLTGGICSTALLSMNVLGGVVVYRDSFGGYKAVSTVLCIWGFCSYVFGMYMKTKLGNAQRRNNNSSGPFSEFIPFGSRDENC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01643 408 Pfam Purine nucleobase transmembrane transport 66 380 - -
Cca08g01643 408 PANTHER OS09G0467300 PROTEIN-RELATED 34 383 IPR030182 GO:0015211|GO:0016021
Cca08g01643 408 MobiDBLite consensus disorder prediction 1 44 - -
Cca08g01643 408 MobiDBLite consensus disorder prediction 1 55 - -
Cca08g01643 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 118 211 - -
Cca08g01643 408 PANTHER TRIOSE-PHOSPHATE TRANSPORTER FAMILY PROTEIN 34 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01643 Cca-Chr8 47937943 47939265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01643 41 374 Organic Solute Cotransporters AT1G30840 61.310 2.62e-138 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01643 - - gmx:100795076 523.857