Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01639 ATGATGCAAAAATCCAATATGCATGTTGAGAAGAATGAGCATCTTCAGTGGATGAACATATCACTGCCAAGTAGCCAATATGCAGTGAAACTGAAACATGAAAACAGGCATCAAGGAATAAGCTTTTCCAAAAGTGATGCTCTAATCAAAGACAGTGGCAAGAGAATGGAAGATGAAGGATCCAAGACCCTTTGCAAGTGTCTTCCAGGCTTTGGATTTGGTAAAGCAAAGGCTGTTAAACCAAGAAAAGGAGGCATCCAAATCGATCATTCAGTGAATCATGTAATGTCTAGCACATTTTCTTTGGAAAACTTTGAACTTAATTCAGGGGATACACAAGAGAAAGGGATAATAATACAGGAAAATTATCATGAAGATGACTCCATCAGTTCCTACTTTGACCTGCCTTCTATCATATTGAAATGCAGTGGAGATGATGCGTAA 444 0.3829 MMQKSNMHVEKNEHLQWMNISLPSSQYAVKLKHENRHQGISFSKSDALIKDSGKRMEDEGSKTLCKCLPGFGFGKAKAVKPRKGGIQIDHSVNHVMSSTFSLENFELNSGDTQEKGIIIQENYHEDDSISSYFDLPSIILKCSGDDA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01639 147 PANTHER YCF3-INTERACTING PROTEIN 1, CHLOROPLASTIC 33 147 IPR040340 GO:0009535|GO:0048564|GO:0080183
Cca08g01639 147 PANTHER YCF3-INTERACTING PROTEIN 1, CHLOROPLASTIC 1 35 IPR040340 GO:0009535|GO:0048564|GO:0080183
Cca08g01639 147 PANTHER - 33 147 - -
Cca08g01639 147 PANTHER - 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01639 Cca-Chr8 47892725 47893310 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01639 - - pvu:PHAVU_009G245000g 196.052