Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01637 ATGCGTTCCAAATCTCGCCACGGATTCGCAATTCCCCAAATTACCCTCGGACTCCTCTTCTATTTACTCCTGCTGACCCCACGCGCGTCTTTGGCGCTCAACCTCACCGCGCTCCTCTCCACCGTGCCGGACCTCTCCCAATTCACCGCGCTCCTCGCCTCCGCCACGCCCCTCGCCGCGGATCTCTCCGACCGCTCCTCGCTCTCCGTCCTCGCCGTCCCCAACGCCTACCTCTCCGCCGACGACCACCTCGCCCGCCACCGCCTCTCCCCCGCCGCCCTCGCCGATGTCCTCCGCTACCACGTCCTCCTCCAGTTCCTCTCCTGGTCCGACCTCCGCTCCCTCCCCCCCGCCGGCAAGCTCGTCACCACGCTCCTCCAGACCACCGGGCGCGCCACCGACAACTTCGGCTCCGTCAACCTCACGCGCGACCCCCTCTCCGGCGTCGTTTCGATCCGCTCCCCCGCCCCCTATTCCCCCTCCAACGCCACCGTCATTTCGCTCGTCAAAACCCTACCCTACAATGTCACCATCTTCGCCGTCAATTCCCTCCTCATCCCCTCCGGCCTCGACCTCATGGCCTCCGAAACGCGTCCCAACCCTGTCCTCAACATCACCAATGCCCTAGTCGACGGCCACAAATTCAATGTCGCAGCTTCCATGCTCGCTGCCTCCGGCGTTGTTCAGGAATTTGAGGCTGATGAGGGAGGAGCAGGAATCACGCTCTTCGTCCCCATTGATGACGCCTTTGCTGATCTCCCTCCCTCCGTTGCGCTTCAGTCTCTACCAGCGGATAAGAAAGCGGTGGTTCTCAAATTCCATGTACTGCATTCATATTACCCTCTTGGCTCGTTGGAATCCGTTGTTAACCCCTTTCAACCTACGCTCGCCACTGAGGCCATGGGTGCGGGTAGCTTCACACTCAACATTTCGCGCGTGAACGGCTCTGTTGCCATAAACACCGGCATTGTTCAGGCCTCCATTACGCAGACTGTGTTTGATCAGAATCCCGTTGCAATTTTTGGGGTTTCCAAGGTTCTCTTGCCGAGGGAGATTTTTGGCAGGAACCCAATTGTGTCTACCAAGCCTGTGGAGGGGGCTCCTCCGCCGGATGACGGTGCATTGTCGCCAGAGAATTCCCCGGGATTTGATGGACAACCCTCGCACCTATCATCGCCGCCAGGGTTTCGCGAAGATGTGCGGTCAAACACTGGTGGTGGTTCTGGTGGTTCCCAGTCCTTTGTTGTTCTTATTTGTTGCTGTATAGGATTGTATTTTGTGGTATAG 1287 0.5897 MRSKSRHGFAIPQITLGLLFYLLLLTPRASLALNLTALLSTVPDLSQFTALLASATPLAADLSDRSSLSVLAVPNAYLSADDHLARHRLSPAALADVLRYHVLLQFLSWSDLRSLPPAGKLVTTLLQTTGRATDNFGSVNLTRDPLSGVVSIRSPAPYSPSNATVISLVKTLPYNVTIFAVNSLLIPSGLDLMASETRPNPVLNITNALVDGHKFNVAASMLAASGVVQEFEADEGGAGITLFVPIDDAFADLPPSVALQSLPADKKAVVLKFHVLHSYYPLGSLESVVNPFQPTLATEAMGAGSFTLNISRVNGSVAINTGIVQASITQTVFDQNPVAIFGVSKVLLPREIFGRNPIVSTKPVEGAPPPDDGALSPENSPGFDGQPSHLSSPPGFREDVRSNTGGGSGGSQSFVVLICCCIGLYFVV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01637 428 MobiDBLite consensus disorder prediction 359 408 - -
Cca08g01637 428 Gene3D FAS1 domain 27 188 IPR036378 -
Cca08g01637 428 Gene3D FAS1 domain 203 350 IPR036378 -
Cca08g01637 428 SMART fasc_3 241 350 IPR000782 -
Cca08g01637 428 SUPERFAMILY FAS1 domain 33 187 IPR036378 -
Cca08g01637 428 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 13 425 - -
Cca08g01637 428 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 425 IPR033254 -
Cca08g01637 428 ProSiteProfiles FAS1/BIgH3 domain profile. 202 347 IPR000782 -
Cca08g01637 428 Pfam Fasciclin domain 214 349 IPR000782 -
Cca08g01637 428 ProSiteProfiles FAS1/BIgH3 domain profile. 32 185 IPR000782 -
Cca08g01637 428 SUPERFAMILY FAS1 domain 209 349 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01637 Cca-Chr8 47821885 47823922 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01637 - - ccaj:109812902 792.341