Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01632 ATGCCAGAAGCACGAGAGCTTCCAGGGTTTTATTATGACCCTGAGAAGAACAGGTATTTCCCCATCAAAGGCCCTATTCCTGGTTCTTCTTCTAAGCCCAAGACACCCCAAGCCCCTTCCAAACAGGTGCAGGAAAGTGGTGGGAGTTGTTGTAGGAAGCTTAGAAACAGAACTTCTAAGCTGCTTCAGGCTAGGGAGTTGGATGGTCACCGTGTCATTGCCTCTCACAATTGCAAGCGTAATATTGCTGAGGAATTCCGGAAAATACACGCAGCTAAACCTGTTGTCTGGAAATTTCGGGGAGCTGATAAGATAGGTATCAGCGCTATGGAACACTTGCGTGTTGATGTGCAGACGCGGCATGGGCAATCTGAAACTGATGTTTTGTTGACGGGCAACATAAATGGATCACTGAGTTTTTCTGAAGTTGGAAAGGTTGGACAATATTTTGATGGTGGGGCACAATGGATGGCAGATTGTGTGAAGAATTATGATAAGGGGAAAACAGTCGAGCAGGATGAGTTGCTTGGGCCAGTTTTCAGACCTAATCGAGCTGCATTACTTATGCCCTCCAGGATATCTTGTATAAGATTGGGTCCGAATTGCTCTTCTCATGCTGTGAATGGCAGTCCTATTGTTGGACATGCATTATTTACTACTTTGGGATCAGAGACATCAGGTGGATCAGTTTATACAATTGGTTTTGTTGAACCATTAGACCTTGGAGCAGGTATACTGAACACATGGAGCAGACTAGAGGAAATTGCTTCTTTCAGGTGTACCCTTTGGACAGCAGAATACGATTATAATAGACATCAGGCTGTAATCGGTACAAATATGGGAGGTGCTTCAGTGAATCTGGAAACTGGGATTACATCATGGTTTTTACATTGTAAAAGTGATGTTTTTGCACAACAAATTGTTAATTCGGGAAATGTGATTTTATGTGGGCTCAGAAATGGGGCAATTGTCACTGTAGATTTTCGTGAGAAAAGAGAAAGGCTTTCTGGTAGACTTATTACCCATCGGATACCTTATACATCTTCAGATAAGAAAGTTGGAGGTTCTAATAAAGAATGGTTCAAGCTCAAAGGAGACATAAATCCTTCTCATACGATTAGGATGCCTTCATCAATATCCTCTTTGGTGTCACTTCAGGATGAGCAATACTTCTTGGCAAGCTCAATGGATGGATCGATGAGGCTTTATGATCATCGTCTACTCCAGAGGGGTGCTGTTCAATATTACGAAGGGCATGTGAATTCTCATACTCGTATACAGATGGGTGTTGATCCAACTGAGAGATTTGTTATGTCAGGTGGAGAGGATTGCAAACTACGGTTATGGAGTATCAAGTCTGGTGAACTTCTTTTTGAGGACAAGTTCTCTGATTCAGTTCTCTCCGCTGTGTGCTATAAAACATGTAGAAATAGTTTCATAGCAGAAGAGGAAACCCAATACAAGCATGACTCTTCTATCGAACGTGAACCTGCTGCTGATCTATCTTATGCTCACGTGACCAAGTCTGAATATCCTCAAAAGCACGTTTCTGATGAAATAGATGGACACAATACCTGA 1578 0.4246 MPEARELPGFYYDPEKNRYFPIKGPIPGSSSKPKTPQAPSKQVQESGGSCCRKLRNRTSKLLQARELDGHRVIASHNCKRNIAEEFRKIHAAKPVVWKFRGADKIGISAMEHLRVDVQTRHGQSETDVLLTGNINGSLSFSEVGKVGQYFDGGAQWMADCVKNYDKGKTVEQDELLGPVFRPNRAALLMPSRISCIRLGPNCSSHAVNGSPIVGHALFTTLGSETSGGSVYTIGFVEPLDLGAGILNTWSRLEEIASFRCTLWTAEYDYNRHQAVIGTNMGGASVNLETGITSWFLHCKSDVFAQQIVNSGNVILCGLRNGAIVTVDFREKRERLSGRLITHRIPYTSSDKKVGGSNKEWFKLKGDINPSHTIRMPSSISSLVSLQDEQYFLASSMDGSMRLYDHRLLQRGAVQYYEGHVNSHTRIQMGVDPTERFVMSGGEDCKLRLWSIKSGELLFEDKFSDSVLSAVCYKTCRNSFIAEEETQYKHDSSIEREPAADLSYAHVTKSEYPQKHVSDEIDGHNT 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01632 525 Pfam WD domain, G-beta repeat 416 450 IPR001680 GO:0005515
Cca08g01632 525 Gene3D - 258 502 IPR015943 GO:0005515
Cca08g01632 525 SMART WD40_4 409 450 IPR001680 GO:0005515
Cca08g01632 525 SMART WD40_4 366 404 IPR001680 GO:0005515
Cca08g01632 525 SUPERFAMILY WD40 repeat-like 286 471 IPR036322 GO:0005515
Cca08g01632 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 459 IPR001680 GO:0005515
Cca08g01632 525 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 489 - -
Cca08g01632 525 MobiDBLite consensus disorder prediction 1 49 - -
Cca08g01632 525 PANTHER KATANIN P80 SUBUNIT 12 489 - -
Cca08g01632 525 MobiDBLite consensus disorder prediction 30 49 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01632 389 461 Miscellaneous Gene Families AT5G08390 30.137 1.13e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01632 K11799 - gmx:100798753 807.749