Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01622 ATGGCTTCAACAAGAGACAATGTTGAGGCTGAACCTCAAAGAAGCTATTGGAGATGGAGCAAGAAAGATTTCTTGCCAGAGGAGTCCTTCGAAAGCTGGAACAACTACTTTTCTGCCCTTTCACAGACCCGGCTAAGGTTCAAGGACCGTCTCTTCAGCAGATCAGATGATGCCACTGAGACTGAAGAACTCAGGAAACATAGTGAGCATGACATGAAGCGTTGCCTCAACTGGTGGGACCTCATATGGTTCGGTTTTGGTGCAGTGATTGGAGCAGGAATCTTTGTGCTCACTGGTCAAGAGGCTCATGAGCATGCTGGATCAGCTATTGTCTTATCCTATGTTGCCTCAGGCTTCTCAGCAATGCTTTCTGTTTTCTGCTACACTGAGTTTGCTGTAGAAGTTCCATCAGCAGGAGGCTCATTTGCTTACCTCAGAATTGAATTAGGAGACTTTGTTGCTTTTATAACTGCTGCCAACATTATTCTCGATAGTGTTATTGGAAATGCAGCAGTGGCAAGGTCATGGACTTCTTACTTCACAACCCTTTTGAACCGTCCCAAGGATTCATTGCGCATTAGAACAAATCTCACAGAGGGGTACAACTTGCTGGACCCTATAGCCTCTGGGGTTCTGGTAATTGCTGCAGTAATCACAATGACAAGCACAAAGAAAACCTCATATCTCAATTGGATAGCATCTGCCATCAACACTGCTGTTATCATTTTTGTGATTGTTGCAGGGTTTGCTCATGCTGACACTTCAAATTTGACACCCTTTTTACCTTATGGGGCCAAGGGGGTGTTTCAGGCTGCAGCAATTCTTTACTTTGCATATGGAGTGTTTGACAGCATTGCAACCTTGGCTAAAGAAACCAAGAACCCATCAAGGGACATACCAATAGGTTTGGTTGGGTCAATGTCCATGATCACAGTGATTTATTGCTTGATGGCACTCTCACTAAGCATGATGCAGAAATACACAGACATAGACACTGGTGCTGCTTTCTCAGTTGCATTTCAGAAAGTGGGAATGAAGTGGGCACAGTATGTTGTAGCTTTTGGTGCACTGAAGGGAATGACCACAGTGCTTCTTGTGGCCACATTGTCACAGGGTCGTTACATCACTCACATTGCACGCTGCCACATGATCCCACCATGGTTTGCTCTTGTGCACCCTAAGACTGGAACCCCGATAAATGCTACAATCTTGATCACCACCTTAGCTTCCATCATAGCCTTTTTCACCGGTTTGGATGTGTTGTCAAGCTTGATATCTGTGAGCACACTCTTTGTGTTCATGATGATTTCAATTGCCCTTTTGGTGAGGAGGTACTATGTGAGAGGGGTCACACCAAGGGAGAATCTGTTAAAGCTAATAATCTTCTTGGTGCTCATTGTTGCTTCCTCAATGGGAATTTCAGCTTACTGGGGACTGAGGCCTAATGGCTGGTTTGGATACACTGTGACTGTTCCTGTTTGGTTCTTGGCAACTCTAGGGATGTCACTGTTTTTGACTCAGCAAAGGGTGCCAAGAGTTTGGGGCGTTCCACTTGTCCCATGGTTTCCATCTTTGTCAATTGCAACAAATGTATTCCTCATGGGGTCTTTGGAATATGAAGCCTTCATAAGATTTGGAGTGTGCACTGTCATAATGCTTATATATTACTTTTTCTTTGGTCTTCATGCCACTTATGATATGGCTCACCAACAAAAAAACGTTGCAATCCAAAGTTGA 1737 0.4433 MASTRDNVEAEPQRSYWRWSKKDFLPEESFESWNNYFSALSQTRLRFKDRLFSRSDDATETEELRKHSEHDMKRCLNWWDLIWFGFGAVIGAGIFVLTGQEAHEHAGSAIVLSYVASGFSAMLSVFCYTEFAVEVPSAGGSFAYLRIELGDFVAFITAANIILDSVIGNAAVARSWTSYFTTLLNRPKDSLRIRTNLTEGYNLLDPIASGVLVIAAVITMTSTKKTSYLNWIASAINTAVIIFVIVAGFAHADTSNLTPFLPYGAKGVFQAAAILYFAYGVFDSIATLAKETKNPSRDIPIGLVGSMSMITVIYCLMALSLSMMQKYTDIDTGAAFSVAFQKVGMKWAQYVVAFGALKGMTTVLLVATLSQGRYITHIARCHMIPPWFALVHPKTGTPINATILITTLASIIAFFTGLDVLSSLISVSTLFVFMMISIALLVRRYYVRGVTPRENLLKLIIFLVLIVASSMGISAYWGLRPNGWFGYTVTVPVWFLATLGMSLFLTQQRVPRVWGVPLVPWFPSLSIATNVFLMGSLEYEAFIRFGVCTVIMLIYYFFFGLHATYDMAHQQKNVAIQS 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01622 578 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 12 573 - -
Cca08g01622 578 PANTHER CATIONIC AMINO ACID TRANSPORTER 5 12 573 - -
Cca08g01622 578 Pfam C-terminus of AA_permease 514 563 IPR029485 -
Cca08g01622 578 Pfam Amino acid permease 76 471 IPR002293 GO:0016020|GO:0022857|GO:0055085
Cca08g01622 578 Gene3D Amino acid/polyamine transporter I 70 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01622 Cca-Chr8 47383427 47385395 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01622 8 571 Organic Solute Cotransporters AT2G34960 73.451 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01622 - - gmx:100802519 1004.97