Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01619 ATGGCTTCCACAGGAGACAATGATGAGGCTGAACCTCAGAGAGGGTATTGGAGATGGAGCAAGCAAGATTTCTTGCCAGAGGAGTCCTTCCAAAGCTGGAACAACTACTTTTCTGCCCTTTCACAGACCCGGCTAAGGTTCAAGGACCGTCTCTTCAGCAGATCAGATGATGCCACTGAGACTGAAGAACTCAGGAAACATAGTGAGCATGACATGAAGCGTTGCCTCAACTGGTGGGACCTCATATGGTTCGGTTTTGGTGCAGTTATTGGAGCAGGAATCTTTGTGCTCACTGGTCAAGAGGCTCATGAGCATGCTGGATCAGCTATTGTCTTATCTTATGTTGCCTCAGGCTTCTCAGCAATGCTTTCTGTTTTCTGCTACACTGAGTTTGCTGTAGAAGTTCCATCAGCAGGAGGCTCATTTGCTTACCTCAGAATTGAATTAGGAGACTTTGTTGCTTTTATAACTGCTGCCAACATTATTCTCGATAGTGTTATTGGAAATGCAGCAGTGGCAAGgatacggcaactttcagaggataaaGTTACAGTTAGAGGGTCACAAGGTCATGCTGGAACTGTCCCAATGTCCATGCGCCAGGATCCTATGACTGCTGCTGCGGAACAAATTGTAGTCTTGGAAAAGCTCTGTAAACATCCTGAGGAATACCTCTCTTATGATGGTCATTGCACTGATTCAACAGTGAAATCACTGTCAAGCTCACTTGTGTGTACTGTTGGAGAGATATCTACATGGCCAAGTGCCAGTAATGTCATTCCAGGCCAGGTTACGTATACGGTTGATATACGAGCAATTGATGACCTCGGACGCGAAGCTGTTATCTATGATTTATCCAATCAAATCTATCAAATATGTGACAAGCGTTCAGTTTCCTGCATTATTGAACACAAGCATGATGCAGGTGCTGTGATGTGTGATTCTGAGTTGAGTTCACAACTCAAATCTGCAGCTTATTCTGCACTAAAGAAGATAGAGGGTGACATTCAGGATGATGTGCCAACATTAATGAGTGGAGCAGGGCATGATGCAATGGCAATATCTCACTTAACAAAGGTTGGAATGCTGTTTGTGCGTTGTCGTGGTGGCATAAGTCACTCTCCACAAGAACATGTGCTAGATAATGATGTTTGGACAGCTGGTTTAGCAACCTTATCATTTCTGGAAAACCTATGA 1197 0.4344 MASTGDNDEAEPQRGYWRWSKQDFLPEESFQSWNNYFSALSQTRLRFKDRLFSRSDDATETEELRKHSEHDMKRCLNWWDLIWFGFGAVIGAGIFVLTGQEAHEHAGSAIVLSYVASGFSAMLSVFCYTEFAVEVPSAGGSFAYLRIELGDFVAFITAANIILDSVIGNAAVARIRQLSEDKVTVRGSQGHAGTVPMSMRQDPMTAAAEQIVVLEKLCKHPEEYLSYDGHCTDSTVKSLSSSLVCTVGEISTWPSASNVIPGQVTYTVDIRAIDDLGREAVIYDLSNQIYQICDKRSVSCIIEHKHDAGAVMCDSELSSQLKSAAYSALKKIEGDIQDDVPTLMSGAGHDAMAISHLTKVGMLFVRCRGGISHSPQEHVLDNDVWTAGLATLSFLENL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01619 398 SUPERFAMILY Zn-dependent exopeptidases 322 398 - -
Cca08g01619 398 Pfam Peptidase family M20/M25/M40 288 387 IPR002933 GO:0016787
Cca08g01619 398 Gene3D Amino acid/polyamine transporter I 70 179 - -
Cca08g01619 398 Gene3D - 180 309 - -
Cca08g01619 398 SUPERFAMILY Bacterial exopeptidase dimerisation domain 182 308 IPR036264 -
Cca08g01619 398 PANTHER ALLANTOATE DEIMINASE-RELATED 174 392 - -
Cca08g01619 398 Pfam Amino acid permease 76 172 IPR002293 GO:0016020|GO:0022857|GO:0055085
Cca08g01619 398 Pfam Peptidase dimerisation domain 182 287 IPR011650 -
Cca08g01619 398 PANTHER ALLANTOATE DEIMINASE-RELATED 174 392 IPR010158 GO:0016813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01619 Cca-Chr8 47365689 47367602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01619 13 174 Organic Solute Cotransporters AT2G34960 78.395 3.52e-88 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01619 K02083 - gmx:100137075 422.165