Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01617 ATGGCAACAAGATCTTTGGTCTTGACCTTGTTTCTGGGGATGGCTTGTTCCATTGTAATTGGTTCATATGAGGAGATTTTGCCTCCTAGGACAATTTATAGTGGCAACTATCACGAAGCAATAAGAAGACTTCAGTCATTTAAGACCTCTCTAACCAGACATGATTCCATTGCTTCAGCACCATCTTCTATATCACCCTCCTTTAGTCCTTCTCCTTCTCCCTCTCCGGATGTGGACAAGCCACGTGTATACAGTGTGACATCTTATGGTGCAGATCCAACGGGTAATTCAGACAGCACTGAAGCATTCCTTGAAGCCATAGCAGATGCAGTTAAAGGACCAAGTAAAGGATATTTGATTCAAGGCATAAGAGACCTTGGAGGTCCCCAGATTAATCTTGAGGGTGGAAATTACTTGATCAGCCAGTCACTGAAGTTGCCCTCAGGAGTAGGAAACCTTATGATACATGGGGGAACTATAAGAGCCTCAGATAGTTTTCCATCAGATGGCTATCTCATTGATTTGTCAACCTCTTTCAATGGAGGAGACAAATCATCCTACAATTTTGAGTTCATAACTCTCAAGGACCTCTTGTTGGATTCAAGCTTCAGGGGTGGAGGCATTTCAGTCATAAACTCACTTAGGATCAACATAGACAACTGTTACATCACACATTTCACCACCAATGGAATTTTAGTCCAAAGTGGTCATGAAACCTACATTAGGAACACTTTCCTTGGTCAGCACATAACTGCAGGTGGGGACAAACATGAGAGAGACTTCTCAGGCACAGGAATAAACCTCCAGGGAAATGACAATGTTGTCACAGATGTTGTAATTTTCTCTGCTGAAGTTGGAATAATGGTAACTGGTGAGGCCAATTCTTTTTCTGGTGTACATTGTTACAATAAGGCCACTGGCTTTGGTGGCACTGGAATTTACTTGAAACTACCAGGTTTGACACAAACCTGGATTGTGAATTCTTACATGGATTTCACTAGCATTGTGGCAGAAGACCCGGTTCAACTTCATATCTCTAGCAGTTTCTTCCTTGGTGATGCCAACATTGTCCTAAAGTCCAAAAATGGGGTGGTGAATGGTGTTAATATTGTTGATAACATGTTCTCAGGTTCAAATCATGGGGTTGAGATTGTTCAGCTGGACCAATCAAATGGTCCTTTCCAACAAATTGATCAAGTTATTGTTGACAGAAACATTGCAAGGGGGATGAATATAAAGGCCACAGTAGCAAAAAAATCCATGCAAGGGAATGGAACCTCATGGACCGTTGATTTTAACAATGTTTTGCTTTTTCCTAACCTTATAAAAAATGTTCAGTACTCTTTAAGCTCCACAGGTAGCACCTTCCCCAATCATGCTCTAAGGAACGTGTCTGAGAATCGTGTTGTGATTGAAACAAATGAAGCAGTGGATGCCAATGTTTTTGTCACGGTGGATCAAAGTGGGGCAAGTTGA 1476 0.4167 MATRSLVLTLFLGMACSIVIGSYEEILPPRTIYSGNYHEAIRRLQSFKTSLTRHDSIASAPSSISPSFSPSPSPSPDVDKPRVYSVTSYGADPTGNSDSTEAFLEAIADAVKGPSKGYLIQGIRDLGGPQINLEGGNYLISQSLKLPSGVGNLMIHGGTIRASDSFPSDGYLIDLSTSFNGGDKSSYNFEFITLKDLLLDSSFRGGGISVINSLRINIDNCYITHFTTNGILVQSGHETYIRNTFLGQHITAGGDKHERDFSGTGINLQGNDNVVTDVVIFSAEVGIMVTGEANSFSGVHCYNKATGFGGTGIYLKLPGLTQTWIVNSYMDFTSIVAEDPVQLHISSSFFLGDANIVLKSKNGVVNGVNIVDNMFSGSNHGVEIVQLDQSNGPFQQIDQVIVDRNIARGMNIKATVAKKSMQGNGTSWTVDFNNVLLFPNLIKNVQYSLSSTGSTFPNHALRNVSENRVVIETNEAVDANVFVTVDQSGAS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01617 491 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Cca08g01617 491 MobiDBLite consensus disorder prediction 57 92 - -
Cca08g01617 491 Pfam Pectate lyase superfamily protein 85 307 IPR024535 -
Cca08g01617 491 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 1 491 - -
Cca08g01617 491 SMART pbh1 213 235 IPR006626 -
Cca08g01617 491 SMART pbh1 365 386 IPR006626 -
Cca08g01617 491 SMART pbh1 270 291 IPR006626 -
Cca08g01617 491 SMART pbh1 150 175 IPR006626 -
Cca08g01617 491 SUPERFAMILY Pectin lyase-like 76 465 IPR011050 -
Cca08g01617 491 Gene3D - 83 491 IPR012334 -
Cca08g01617 491 PANTHER POLYGALACTURONASE QRT3 1 491 IPR039279 GO:0004650
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01617 Cca-Chr8 47318165 47320975 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01617 - - gmx:100804107 790.415