Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01616 ATGGCCACCAACTCCATGGCTGGCTTGATCACCGGTGCTCATTCTCATCTCTCACGTGACTCTGATGAGCATCAGGCTCCTACCCGTCAAGGTTCATCAAAAACATGTCGAGTTTGTGGTGATGAGATTGGATACAAGGAAAATGGGGAGCGGTTCGTGGCTTGTCATGTCTGTGGATTTCCTGTTTGTCGACCATGTTATGACTATGAGAGGAGTGAAGGAAACCAGTGCTGTCCTCAATGCAACACACGCTATAAACGTCACAAAGGTTGTCCTAGAGTGGTTGGGGATGAGGATGAGAACTCTGATGCAGATGATTTTGATGATGAGTTTCAGATTAAGAATCATCGTGAAGATCTAGATCGGCAATATGATGTTAATCATGTGGAAAATGGGGACTACAATAAAGAGAAGTTGCATCCCAATGGTCAAGCTTTCTCTTCAGCTGGGAGTGTTGCTGGCAAGGATTTTGAAGGGGACAAAGATTTCTATAGCAACGAAGAATGGCAAGAAAGAGTAGAGAAGTGGAAAGTGAGGCAAGAAAAGAGAGGTCTTTTAAATAAAGAAGACGGAAAAGAAGACCAAGGTGAAGATGATGATTACCTTTTGGCAGAAGCTAGACAACCATTGTGGCGCAAGGTTCCAATATCTTCAAGCTTAATCAATCCATATCGCATAGTAATTGTGATGAGGCTGGTGATCCTTTGTTTCTTCTTCCGTTTTCGGATCTTAACTCCAGCATACGATGCATTTGCCTTGTGGCTTATCTCAGTGATATGTGAGATATGGTTTGCACTGTCATGGATTCTTGATCAGTTCCCAAAGTGGTTCCCCATCACACGTGAGACCTACTTGGAGCGTTTGTCCTTAAGGTTTGAGCGCGAAGGGGAGCCAAACCAACTTGCCCCAGTTGATGTGTTTGTGAGTACTGTTGACCCTTTGAAGGAACCTCCCATCATAACAGCAAACACTGTCCTTTCAATCCTTTCTGTTGACTATCCTGTTGACAAGGTCAGCTGCTATGTCTCAGATGATGGTGCTTCTATGCTTCTCTTTGATTCTTTGGCAGAAACTGCTGAGTTTGCAAGAAGATGGGTTCCCTTTTGCAAGAAGTATAACATAGAGCCAAGGGCTCCTGAGTTTTACTTCTCTCAAAAAATTGATTATTTGAAGGATAAGGTCCAGCCAACTTTTGTCAAGGAAAGAAGGGCCATGAAGAGAGAGTACGAAGAGTTTAAGGTGAAAATTAATTCTTTGGTGGCAAAGGCTCAGAAGAAACCAGAGGAGGGGTGGGTGATGCAAGATGGAACTCCTTGGCCTGGGAACAACACTCGTGACCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGGTGCACTTGACGTGGAAGGCAAGGAACTGCCGCGACTTGTGTATATTTCACGTGAAAAACGTCCTGGCTATCCCCACCACAAGAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTGGATTGTGACCACTACATCAATAACAGCAAGGCAGTAAGAGAGGCTATGTGCTTTCTAATGGACCCCAACCTTGGGAAGAAGTTGTGTTATGTTCAGTTTCCACAAAGATTTGATGGTATTGATCGCCATGATAGATATGCTAATCGCAACACTGTGTTCTTTGATATCAATATGAAAGGACTTGATGGGATTCAAGGTCCAGTATATGTTGGTACTGGAACTGTGTTCAATAGACAGGCATTATATGGCTATGATCCACCAGTGTCTGAGAAAAGGCCAAAGATGACATGTGACTGCTGGCCATCATGGTGTTGCTTTTGCTGTGGTGGTTCAAGGAAGTCCAAGTCTAAAAAGAAATCAGGAAAAGGTCTCTTCAGTGTTTTCTCCAAGAACAAGAAGAAGAAAATGATGGGAAAAGACTATGTTAGAAAAGGGTCAGGGTCCATGTTTGATCTTGAGGAGATTGAAGAGGGGCTTGAAGGGTATGATGAGCTTGAGAAATCATCTCTCATGTCCCAGAAAAGCTTCGAGAAGCGATTCGGGCAGTCACCGGTTTTCATTGCATCTACATTGGTGGAAAATGGAGGACTTCCTGAAGGCACAAACAGCCAATCATTGGTTAAGGAGGCCATTCATGTTATAAGCTGTGGCTATGAAGAGAAGACCGAATGGGGCAAAGAGATTGGATGGATTTATGGGTCAGTGACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTGTATTGCATGCCAAAGAGAGCAGCATTCAAAGGATCTGCTCCTATAAATCTATCAGATAGGTTGCACCAAGTTCTAAGGTGGGCTCTTGGTTCTGTTGAGATTTTCCTTAGTCGACACTGCCCCTTGTGGTATGGCTATGGAGGAAAACTGAAGTACCTAGAAAGATTGGCTTACACTAACACCATTGTTTATCCATTCACTTCCATCCCTCTGCTTGCATACTGCACAATTCCTGCCGTGTGTCTCTTAACTGGAAAATTCATCATCCCCACACTTACCAACCTTGCTAGCGTTTGGTTTATGGCTCTATTTATCTCCATCATTTTAACTAGTGTGCTTGAGCTCCGATGGAGTGGAGTGACCATAGAAGACTTGTGGCGCAATGAGCAGTTTTGGGTGATTGGAGGCGTTTCTGCTCACCTTTTTGCTGTGTTTCAAGGGCTTCTCAAAGTTCTTGGTGGAGTAGATACCAACTTCACTGTCACAGCAAAAGCAGCAGAAGACACTGAATTTGGAGAGCTGTATCTCTTCAAGTGGACCACTCTTCTGATCCCACCAACCACTCTCATAATATTGAACATCGTTGGAGTTGTGGCTGGAGTCTCTGGTGCCATCAACAATGGATATGGTTCATGGGGACCTTTGTTTGGGAAGTTGTTTTTTGCCTTCTGGGTCATTGTTCACTTATACCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACTCCTACCATTGTAATCTTGTGGTCAATCCTTCTAGCATCCATTTTCTCTTTGATTTGGGTCAGGATTGATCCCTTCTTGCCCAAGCAAACTGGTCCAGTGCTCAAACAATGTGGAGTAGAATGCTAA 3144 0.4383 MATNSMAGLITGAHSHLSRDSDEHQAPTRQGSSKTCRVCGDEIGYKENGERFVACHVCGFPVCRPCYDYERSEGNQCCPQCNTRYKRHKGCPRVVGDEDENSDADDFDDEFQIKNHREDLDRQYDVNHVENGDYNKEKLHPNGQAFSSAGSVAGKDFEGDKDFYSNEEWQERVEKWKVRQEKRGLLNKEDGKEDQGEDDDYLLAEARQPLWRKVPISSSLINPYRIVIVMRLVILCFFFRFRILTPAYDAFALWLISVICEIWFALSWILDQFPKWFPITRETYLERLSLRFEREGEPNQLAPVDVFVSTVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFARRWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPNLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKSKKKSGKGLFSVFSKNKKKKMMGKDYVRKGSGSMFDLEEIEEGLEGYDELEKSSLMSQKSFEKRFGQSPVFIASTLVENGGLPEGTNSQSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTSVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSGAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVILWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01616 1047 MobiDBLite consensus disorder prediction 14 35 - -
Cca08g01616 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 110 IPR013083 -
Cca08g01616 1047 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 163 1047 - -
Cca08g01616 1047 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 23 119 - -
Cca08g01616 1047 Pfam Cellulose synthase 304 1040 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca08g01616 1047 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 23 119 - -
Cca08g01616 1047 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 163 1047 - -
Cca08g01616 1047 SUPERFAMILY Nucleotide-diphospho-sugar transferases 317 851 IPR029044 -
Cca08g01616 1047 Coils Coil 402 422 - -
Cca08g01616 1047 Pfam Zinc-binding RING-finger 27 102 IPR027934 -
Cca08g01616 1047 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 417 595 IPR029044 -
Cca08g01616 1047 SUPERFAMILY RING/U-box 20 105 - -
Cca08g01616 1047 CDD mRING-HC-C4C4_CesA_plant 34 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01616 Cca-Chr8 47307691 47313106 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01616 27 1047 Glycosyltransferase AT5G05170 65.953 0.0 1442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01616 K10999 - gmx:100781996 2014.19