Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01613 ATGAGATTCTCAACCTTAGCCTTTCTCTTATTGTTGGTGGTACAAGAAGCCACTTGCTTCAGCAAACACACACCACTGCCTCATTTCAGGAACAAACTTAAGGATAGAATGGCCTCTGCCCTCTCCCAACCACCATCTCCATCTCCATCTCCAGATACAAAAAATAGTGGTAGAGTGGTGTACCCAAGTGAGTATGGTGCAGACCCCACAGGAGCAAAAGAGAGCAGTGATGCCATTCTGAAAGCAGTGGGAGAAGCTTTTGGGTTGGAGAGTGGACTTGAGATGCTTCAAGGGATTAAGGATCTTGGAGGGGTTGTGATTGATCTGCAAGGTGGAAACTACACTATCAGCAAACCCATCACATTTCCTTCCTCTGGTGGTGGCAATGTTGTGGTAAAAGGAGGAACATTGAGAGCTTCTGATTCATTCCCCACTGATAGGCATCTTGTTGAGTTATGGTCATCAAATTCCAAAAAGCATCCTAAAACATCAGTTATCAGCAGCACAAAACTTCAGCAACCAAATGGTATTTACTATGAAGACATAACATTCAGAGACATTCTCTTTGATTCTGGCTTCAGGGGTGGAGGCATATTCATTGCTGATTCAGCCAGAACAAGGATCAACAACTGCTTCTTCCTGCACTTCACCACAGAAGGGATTCTAGTCCAAGGGAGCCATGAGACCTTCATCTCAAGCTGTTTCCTTGGGCAGCACTCAACAGTTGGTGGGGACAAAAGGGAGAGGAATTTCACTGGCACTGCCATTGATCTTGCCAGCAATGACAATGCCATCACAGATGTTGCAATCTTTTCTGCAGCCATAGGGGTTGTTCTGAGGGGTCAGGCCAACATGGTCACTGGGGTGCATTGTTATAACAAAGCCACAGGTTTTGGTGGCATTGGCATTTTGGTCAAACTGCCTGGATATTCACAAACTAGGATTGATAATTGTTACATGGACTATACAGGTATAGTGCTGGAAGATCCTGTTCAAGTTCATGTGACTAATGGGTTTTTCTTGGGGGATGCTAACATAGTTTTGAAGTCAATTAAAGGAAAAGTTTCTGGTTTGAATATAGTTGACAATATGTTCTCAGGGAACTCCAAAAGCAAGGTTCCAATTATAACTCTAGATGGTGAATTCAGTGAGATTGATCAAGTGGTGGCTGATAGGAACAATGTGATGGGGATGAGTTTGAGATCAACGGTTGGGAAGTTAAGTGTGGCAGGAAATGGCACAAAGTGGGTGGCTGATTTTTCAAATGTTCTGCTATTCCCCAATCGGATTAGTAATTTCCAGTATTCATTTCATGCACAAGGGGAGGACAAGTTCTTGGCACATTCTGTGACCAATGTCACTAACAATGTTGTAGTTGTGGAAAGTGAAAAACCAGCTCAAGGGCTTGTTTCTTTCTTGGTTGAACAATAA 1431 0.434 MRFSTLAFLLLLVVQEATCFSKHTPLPHFRNKLKDRMASALSQPPSPSPSPDTKNSGRVVYPSEYGADPTGAKESSDAILKAVGEAFGLESGLEMLQGIKDLGGVVIDLQGGNYTISKPITFPSSGGGNVVVKGGTLRASDSFPTDRHLVELWSSNSKKHPKTSVISSTKLQQPNGIYYEDITFRDILFDSGFRGGGIFIADSARTRINNCFFLHFTTEGILVQGSHETFISSCFLGQHSTVGGDKRERNFTGTAIDLASNDNAITDVAIFSAAIGVVLRGQANMVTGVHCYNKATGFGGIGILVKLPGYSQTRIDNCYMDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGKVSGLNIVDNMFSGNSKSKVPIITLDGEFSEIDQVVADRNNVMGMSLRSTVGKLSVAGNGTKWVADFSNVLLFPNRISNFQYSFHAQGEDKFLAHSVTNVTNNVVVVESEKPAQGLVSFLVEQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01613 476 Gene3D - 63 467 IPR012334 -
Cca08g01613 476 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 1 476 - -
Cca08g01613 476 PANTHER POLYGALACTURONASE QRT3 1 476 IPR039279 GO:0004650
Cca08g01613 476 MobiDBLite consensus disorder prediction 37 72 - -
Cca08g01613 476 SUPERFAMILY Pectin lyase-like 6 325 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01613 Cca-Chr8 47258086 47262040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01613 - - gmx:100802482 783.097