Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01611 ATGGAAGAAGAAGATGAGTCCCAAGTTGCTCTAAACAAAACTCTTCCTGTTCGAGTTTATGCTGATGGGATTTATGATCTCTTTCACTTTGGCCATGCCCGTTCTCTTGAGCAAGCCAAAAAACTGTTTCCAAACACTTATCTCCTTGTTGGATGCTGCAATGATGAGATCACCCATAAGTATAAGGGCAAAACTGTTATGACCGAGAAGGAGCGCTATGAGTCTCTTCGCCACTGCAGGTGGGTTGACGAAGTTATTCCAGATGCACCATGGGTAATCACTCAGGAGTTCCTTGATAAGCATCAAATTGACTACGTGGCACATGATAGTCTTCCTTATGCTGATGCAAGTGGAGCTGGAAAGGATGTGTATGAATACGTCAAGTCTGTTGGAAAATTTAAAGAAACAAAGCGGACTGAAGGAATTTCTACTTCTGATATAATAATGAGAATTATTAAAGATTATAATCAATATGTAATGCGTAATTTGGAACGTGGTTATACAAGAAAGGATCTAGGTGTCAGCTATGTCAAGGAGAAGAGGTTGAGAATGAACATGGGACTTAAAAAGTTGCAGGAGAGAGTGAAGAAACAGCAAGAGAAAGTGGGAAAGAAGATTCAAACGGTGGGAAAAATTGCTGGAATGCACCCTAACGAATGGGTTGAAAATGCTGATCGGTTGGTTGCTGGATTTCTCGAGATGTTTGAAGAAGGTTGCCACAAAATGGGAACAGCAATCAAAGACAGAATACAAGAACGATTAAGGGCACAGCAGCTGAAATCTCTTCTATATGATGAGTGGgatgatgatgagtgggatgatgatgatgatgatgaagtatatgatgatgaagtatatgatgatgaATACTACACCGACTAA 882 0.3776 MEEEDESQVALNKTLPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITHKYKGKTVMTEKERYESLRHCRWVDEVIPDAPWVITQEFLDKHQIDYVAHDSLPYADASGAGKDVYEYVKSVGKFKETKRTEGISTSDIIMRIIKDYNQYVMRNLERGYTRKDLGVSYVKEKRLRMNMGLKKLQERVKKQQEKVGKKIQTVGKIAGMHPNEWVENADRLVAGFLEMFEEGCHKMGTAIKDRIQERLRAQQLKSLLYDEWDDDEWDDDDDDEVYDDEVYDDEYYTD 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01611 293 Coils Coil 181 208 - -
Cca08g01611 293 PANTHER CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE 2-LIKE ISOFORM X1 5 292 - -
Cca08g01611 293 PANTHER CYTIDYLYLTRANSFERASE 5 292 IPR045049 GO:0004105|GO:0006657
Cca08g01611 293 MobiDBLite consensus disorder prediction 268 293 - -
Cca08g01611 293 Gene3D HUPs 2 237 IPR014729 -
Cca08g01611 293 CDD CCT 16 166 IPR041723 -
Cca08g01611 293 SUPERFAMILY Nucleotidylyl transferase 18 150 - -
Cca08g01611 293 TIGRFAM cyt_tran_rel: cytidyltransferase-like domain 18 85 IPR004821 GO:0003824|GO:0009058
Cca08g01611 293 Pfam Cytidylyltransferase-like 20 149 IPR004821 GO:0003824|GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01611 Cca-Chr8 47242969 47250226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01611 43 283 Acyl Lipid Metabolism Gene Families AT2G32260 77.273 2.18e-134 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01611 K00968 - gmx:100786249 510.375