Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01610 ATGACGACGAGTTCCCAAGCCTACGGTGAACCATGGTACTGGGACAACCGTTACACCAACGAACCTGGTCCCTTTGATTGGTACCAAAAGTACCTCACTTTGGCACCCATCATCACCCTCTATGTCCCTTCCAACCACCCTCTCCTCGTCGTTGCCTTCAGTGAAGGCATGGTGGTTGATGGCGGTTACACGGATGTTGTCAACATTGATATATCTTCGGTGGTCATTGATGCTATGAAAACCAAATACCGAGATTATCCCCAATTGAAATATATGAAAATGGATGTCAGAGACATGAGTGATTTTCAATCAGAGTCTTTTGGGGCTGTTATTGACAAAGGTGTGCTTACTTGTGGAAGTAATTCAAAGCAAAATGCTACAAAAATGCTTGAGGAAATTTGGAGGGTCCTCAAGGATAAAGGAGTTTATGTTCTGGTGACATATGGAGCTCCACCATATCGCCTACGTTTGCTACGAGAGTCATGCTCATGGACTATAAAACTCCATGTGATAGAGAAACTTGCATCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGAAGAGAAATCTGAACATCCAGTTTGGGAGCTGACAAAACCTGTTCCACTTAATAATGATGGAAGCTCTGTGGAGGAAGCCCTAGGACGGAATCCTGATGTCCATTATATATATATTTGCACTAAGGAAATTTCTGCTAACTCAAACGTGACTGCGTGA 834 0.3621 MTTSSQAYGEPWYWDNRYTNEPGPFDWYQKYLTLAPIITLYVPSNHPLLVVAFSEGMVVDGGYTDVVNIDISSVVIDAMKTKYRDYPQLKYMKMDVRDMSDFQSESFGAVIDKGVLTCGSNSKQNATKMLEEIWRVLKDKGVYVLVTYGAPPYRLRLLRESCSWTIKLHVIEKLASEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEEKSEHPVWELTKPVPLNNDGSSVEEALGRNPDVHYIYICTKEISANSNVTA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01610 277 Gene3D Vaccinia Virus protein VP39 6 184 IPR029063 -
Cca08g01610 277 Coils Coil 225 230 - -
Cca08g01610 277 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 2 267 - -
Cca08g01610 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 8 160 IPR029063 -
Cca08g01610 277 Coils Coil 171 177 - -
Cca08g01610 277 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 2 267 - -
Cca08g01610 277 CDD AdoMet_MTases 58 148 - -
Cca08g01610 277 Pfam Methyltransferase domain 62 144 IPR013216 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01610 Cca-Chr8 47232915 47235354 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01610 - - gmx:100792939 379.022