Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01600 ATGGCAGCATCATTGGCATGTCTTGTTGGGAGTAGTTTATCTACAAAGAGTAACAAAATAACTCTAGGCAAGGACGTCAATGGAAGATGTTTCTTCTCATTTCAGAGGCTTTCATCATTGAGTAAGAAATCAAAGTCAATATCTGTAAAGGCATCATTGGATCAAAGAAAGCATGAAGGGAGAAGAGGATTTCTGAAATTGTTGAATGTGGGAGTTGGCTTACCTGTATTATTAGGAAGTGGGAAAGCTTATGCTGATGAACAAGGGGCTTCCTCCTCAAGAATGTCTTATTCTAGGTTTCTTGAGTACTTGGACAAGGATAGAGTTAAAAAAGTGGATCTGTATGAGAATGGAACAACTGCTATTGTGGAGGCTGTTTCTCCTGAGTTGGGTAATAGGGTGCAGCGAGTACGTGTGCAACTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAATTCAGGGAAAAGGACATTGACTTTGCAGCTCATAATGGCCAAGAAGAGTCGGGTTCTCCGTTAGCTAACCTGATTGGGAACCTGGCTTTCCCTGTAATTTTGATTGGAGGATTATTCCTTCTCTCAAGACGATCATCAGGAGGAATGGGAGGTCCTGGTGGGTCAGGCTTTCCTCTTGCTTTTGGTCAATCTAAAGCCAAGTTTCAAATGGAGCCTAATACTGGAGTGACATTTGATGATGTTGCTGGAGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAGTTTCTAAAGAAGCCTGAGAGGTACACTGCTGTTGGGGCACGTATACCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGAACTGGGAAGACACTTTTAGCAAAGGCTATTGCAGGTGAAGCAGGTGTCCCGTTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTCGAGTCCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCGTGCATTATTTTTGTGGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACCGGTATCATTGTCGTTGCAGCTACTAACAGGGCTGACATTCTTGATTCTGCATTGTTGAGGCCAGGACGGTTTGATAGACAGGTAACAGTTGATGTTCCAGATATACGTGGAAGGACTGAAATTCTAAAGGTTCATGGTAGCAATAAGAAGTTTGATGCTGATGTTTCACTTGAGGTAATTGCGATGAGAACACCTGGTTTTAGTGGGGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGACGTGGAAAGACAGCAATATCATCCAAAGAGATTGATGATTCTATTGATAGAATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCAATCTGTGGAACTTTGACTCCTGGTCATGATCCTGTACAAAAAGTAACTTTAGTTCCTCGCGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCTGCTGATGACCCAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCGGGGTCTTACTTGGTTCGTTCCTGCTGATGACCCAACTCTGATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTGGGTGGCAGAGCAGCAGAGGAGATTATTTTTGGTGAGCCTGAGGTTACAACTGGAGCAGCTAGTGATTTGCAGCAAATAACCGGTTTGGCCAAACAGATGGTAACCACATTGGGAATGTCTGATATTGGTCCTTGGTCACTCACGGACTCATCAGCTCAAAGTGCAGATGTCATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATGCTGCTGTCAAGAGGATCTCAGATGAAGCATATGAAATTGCATTGAGCCAAATACGGAACAACCGTGAGGCGATTGACAAGATTGTGGAAGTTCTACTGGAGAAGGAGACAATGCCTGGACCAAGCTGTCCCGTCCGAATTTGTTGA 2166 0.4183 MAASLACLVGSSLSTKSNKITLGKDVNGRCFFSFQRLSSLSKKSKSISVKASLDQRKHEGRRGFLKLLNVGVGLPVLLGSGKAYADEQGASSSRMSYSRFLEYLDKDRVKKVDLYENGTTAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKDIDFAAHNGQEESGSPLANLIGNLAFPVILIGGLFLLSRRSSGGMGGPGGSGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERYTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIIFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPADDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGLTWFVPADDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAASDLQQITGLAKQMVTTLGMSDIGPWSLTDSSAQSADVIMRMMARNSMSEKLAEDIDAAVKRISDEAYEIALSQIRNNREAIDKIVEVLLEKETMPGPSCPVRIC 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01600 721 Coils Coil 569 570 - -
Cca08g01600 721 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 19 719 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cca08g01600 721 Pfam AAA+ lid domain 421 464 IPR041569 -
Cca08g01600 721 Pfam Peptidase family M41 569 712 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca08g01600 721 Pfam Peptidase family M41 480 532 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca08g01600 721 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 568 713 - -
Cca08g01600 721 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 5 533 - -
Cca08g01600 721 CDD AAA 241 398 - -
Cca08g01600 721 SUPERFAMILY FtsH protease domain-like 568 713 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca08g01600 721 SUPERFAMILY FtsH protease domain-like 481 532 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca08g01600 721 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 176 532 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cca08g01600 721 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Cca08g01600 721 Gene3D Peptidase M41 476 538 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca08g01600 721 Gene3D Peptidase M41 563 716 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca08g01600 721 Pfam FtsH Extracellular 83 160 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Cca08g01600 721 Pfam ATPase family associated with various cellular activities (AAA) 266 397 IPR003959 GO:0005524|GO:0016887
Cca08g01600 721 SMART AAA_5 262 401 IPR003593 -
Cca08g01600 721 Gene3D - 217 399 IPR027417 -
Cca08g01600 721 PANTHER METALLOPROTEASE M41 FTSH 568 713 - -
Cca08g01600 721 Gene3D - 89 168 - -
Cca08g01600 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 469 IPR027417 -
Cca08g01600 721 Gene3D - 400 475 - -
Cca08g01600 721 PANTHER METALLOPROTEASE M41 FTSH 5 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01600 Cca-Chr8 47065895 47069588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01600 220 711 Miscellaneous Gene Families AT5G53170 46.061 1.13e-127 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01600 K03798 - gmx:100795567 1103.97