Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01529 ATGTTGGGTGGTGCACTTTCTACCCCAACAACTCAAAGTATCAAGCCCACAAGAACAATTGCAATGCTTTATCCAACTCATAGATTATTGTCTCTTAAGAACCCAGTATCAAATACCAGAGGATTTTCCTCAAAAGAGAATTGCTTCATCAGAGGTCACCAGATCAACATCAAGCAATTTTTTGGGCTTATCTCGGGTCCTGCTCCACCAAATAAAGCAGGAAGAGTTGTTTCCCCAAGCTGTGTCTTGCCACTTACAGAAGAGAATGTGGAGAAGGTTTTGGATGAGGTGAGGCCTGGCTTGATGGCTGATGGAGGGAATGTGGCATTACATGAGATAGATGGTCTTGTTGTTGTTCTCAAGCTGCAAGGGGCATGTGGATCATGTCCTAGCTCAACTATGACATTGAAAATGGGAATTGAAACTCGCCTCCGGGATAAGATTCCAGAAATCATGGAAGTGGAGCAGATACTGGACACTGAGACCGGTCTCGAGTTAACTGAAGAGAATGTTGAAAATGTTCTTTCTGAAATTAGACCATACCTTGTTGGCACTGGGGGAGGAATATTGGAGCTTGTTGAGATCAAAGATTATGTTGTCAAAGTTAGGCTAAGTGGACCTGCAGCTGGAGTTATGACAGTTCGTGTTGCCTTAACACAGAAGCTGAGAGACAAGATACCTTCTATTGCGGCTGTGCAACTTATAGATTGA 711 0.4346 MLGGALSTPTTQSIKPTRTIAMLYPTHRLLSLKNPVSNTRGFSSKENCFIRGHQINIKQFFGLISGPAPPNKAGRVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEIMEVEQILDTETGLELTEENVENVLSEIRPYLVGTGGGILELVEIKDYVVKVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLID 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01529 236 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 87 161 IPR034904 -
Cca08g01529 236 PANTHER IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED 21 236 - -
Cca08g01529 236 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 165 235 IPR034904 -
Cca08g01529 236 Gene3D - 82 164 IPR034904 -
Cca08g01529 236 Pfam NifU-like domain 90 155 IPR001075 GO:0005506|GO:0016226|GO:0051536
Cca08g01529 236 Pfam NifU-like domain 171 233 IPR001075 GO:0005506|GO:0016226|GO:0051536
Cca08g01529 236 PANTHER NIFU-LIKE PROTEIN 3, CHLOROPLASTIC 21 236 - -
Cca08g01529 236 Gene3D - 165 236 IPR034904 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01529 Cca-Chr8 45221925 45224478 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01529 - - gmx:100806364 410.223