Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01524 ATGTCTTGTTGCCATGAGCTGTGGAACCGGTCAATTCAAAAGTTCAAAAGATTACAAGCAGAAGAAGCTCCCTCGCCGCCGCAGAACCCTAATCCGAGTTCCCTCGCCGTGCCGGAGCACCGTTCCAACGCCGTCGCTGGGAAACCGTTGAAACAAAACTCTAGCGCCATGAAGACTCCACAAAGTGCGTCTAAATTGAAAAGgaaaagggaagaaggtaaaggtaagaaaaaaaagaaagaaggcaataagcaggaaaaaaggaaaaTTGCAGATGTCCCTAAATCTCGTAGCATGCTGGAGGATGTCCATGATGAAGGGGAAGGGTTTGACAATGAGTCTCCTAGTAGCAAAGTTACGGAAAGTTTGTGGCAAGATCCTGATGACAATGATTCTGGATTAATAGAAGGTTCTGAAACCGAAGAAGATGTTGGGTTTCATTCAGATGAAGAAGATATTGTAATTAATGGTCGACTGACTTCTGAAGATTCAGTGCAGTTGAGTTCTTTTGATTTACATTTGCAACATGATTTATCCAAAGAAGAAATTGACAGTGAAAGGAACAGGAAATTTAGCTGGGAGACTCCAGCTATTGGTTTGTCAAATTGCAAATGGACAGGAACTGGAGAGAACATTTTGGAGGATTTGGATATCAATTCTTGTCATGGTCTCAAAGCAAAGTTGTCTGAGCATTGGATGGATGTATACAAGACATCTGGAGGCAAAGATATTAGTTCTCCTAAACAAAAGATGTTTTTCTCCCTTTGTAACAGCTACAGGGATATACTTTACTGTAACAAGAGGCCTTTCTATCTCAAAGGGCTTGAAGatgcaagcatcatggatgcatacataatgcatTCTCTCAATCATGTCTTCAAAACTAGAGACTGTGTGAAAACAAATGATGCCAAACTGACCAAGCTTAAAGAGAATGCTGATAGTGATAGATTTCGAGATCAGGGCTTTACTCGTCCTAAGGTTTTAATTTTATTGCCATTGTCAAGCATTGTATATCGTGTTGTAAAGAGGCTTATACAGCTCACACCTTCAGCTTACAAGGTCAATGTTGAACATATGGATCGTTTTTCAACAAAATTTGGAAGTGAAGAACATAAAGGTGATATAGAAAATGGCGAAGAGTCTGAAAATGCAAAACCTCACAATTCTTCCAAGCCGTCTGACTTTCAAATACTTTTTGGTGGCAATAATGAGGATGACTTTATGATTGGCATCAAATTTACTAGGAAGACAATCAAGTTGTTCAGTGATTTCCATACCTCAGACATTATTATTGCCTCAGCACTTTGCTTGGTTAATAAAATTGAGGAGGCTGGGAGTAATAAGGAAAAAGATGTAGATTTTCTTTCGTCCATCGAGGTTCTGATTATTGATCATGCAGATGTAATAGCAATGCAGAATTGGTCTCATGTGCATACAGTTATTGAACACTTGAACCGCCTGCCATCTAAGCAGCCAGGAACAGATGTAATGCGCATTAGACCATGGTACATTCTGTATCTTGATGATCATGCCAGATTTTACAGGCAAACAATAATACTGGGTTTTTATTCAAATCCAGATATAAATGCTTCATTCAATCATCAGTGCATTAATTATGAAGGGAAGGTGAAACTGATCTGTGAATATAAAGGTGTCTTGCACAAAGTGCTACCTGACATACGACAAATTTATGAACGATTTAGTGTAGACTCAATAGTAGAAGCTGATGATGCCCGTTTTGATTATTTTGTTAAGAAGGTTTTCCCCAGAATAAAAGATTTAGATCAGGGAGGGACTATGTTATTTACCAATTCTTACTTTGAATTTATTCGAATCCGAAATTTTTTAAAGTCACAGAATGCCTCCTTTTGTCTGCTTGGGGAGTATACAACACAAAGTGATATTTCTCGTGCACGTCTTTGGTTTTACGAAGGCAAAAGAAAAATTATGCTTTACACGGAAAGGTCTCATTTTTACCACAGATATAAGATTCGTGGGGTTCAGAATTTAATCATTTATTCTCTCCCAGAGAGGAAGGAATTTTACCCTGAGATTGTGAATATGCTTGATGGGTCTGACAATATGACATGCACGGTCCTTTTTTCCTTCCTTGACAAGCTTCGGCTGGAAAGAATTGTTGGAACTACTCCAGCCAAAAGAATGGTGGCCGCGGACAAAGGTGTTTTTGTTTTCTGCCATTAG 2205 0.3741 MSCCHELWNRSIQKFKRLQAEEAPSPPQNPNPSSLAVPEHRSNAVAGKPLKQNSSAMKTPQSASKLKRKREEGKGKKKKKEGNKQEKRKIADVPKSRSMLEDVHDEGEGFDNESPSSKVTESLWQDPDDNDSGLIEGSETEEDVGFHSDEEDIVINGRLTSEDSVQLSSFDLHLQHDLSKEEIDSERNRKFSWETPAIGLSNCKWTGTGENILEDLDINSCHGLKAKLSEHWMDVYKTSGGKDISSPKQKMFFSLCNSYRDILYCNKRPFYLKGLEDASIMDAYIMHSLNHVFKTRDCVKTNDAKLTKLKENADSDRFRDQGFTRPKVLILLPLSSIVYRVVKRLIQLTPSAYKVNVEHMDRFSTKFGSEEHKGDIENGEESENAKPHNSSKPSDFQILFGGNNEDDFMIGIKFTRKTIKLFSDFHTSDIIIASALCLVNKIEEAGSNKEKDVDFLSSIEVLIIDHADVIAMQNWSHVHTVIEHLNRLPSKQPGTDVMRIRPWYILYLDDHARFYRQTIILGFYSNPDINASFNHQCINYEGKVKLICEYKGVLHKVLPDIRQIYERFSVDSIVEADDARFDYFVKKVFPRIKDLDQGGTMLFTNSYFEFIRIRNFLKSQNASFCLLGEYTTQSDISRARLWFYEGKRKIMLYTERSHFYHRYKIRGVQNLIIYSLPERKEFYPEIVNMLDGSDNMTCTVLFSFLDKLRLERIVGTTPAKRMVAADKGVFVFCH 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01524 734 MobiDBLite consensus disorder prediction 113 127 - -
Cca08g01524 734 PANTHER ORF PROTEIN-RELATED 36 733 IPR010678 GO:0005730|GO:0006364|GO:0034511
Cca08g01524 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 654 IPR027417 -
Cca08g01524 734 MobiDBLite consensus disorder prediction 132 148 - -
Cca08g01524 734 Gene3D - 283 501 IPR027417 -
Cca08g01524 734 MobiDBLite consensus disorder prediction 368 396 - -
Cca08g01524 734 MobiDBLite consensus disorder prediction 17 150 - -
Cca08g01524 734 MobiDBLite consensus disorder prediction 47 62 - -
Cca08g01524 734 MobiDBLite consensus disorder prediction 70 84 - -
Cca08g01524 734 MobiDBLite consensus disorder prediction 368 388 - -
Cca08g01524 734 MobiDBLite consensus disorder prediction 85 112 - -
Cca08g01524 734 Pfam Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 247 732 IPR010678 GO:0005730|GO:0006364|GO:0034511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01524 K14774 - gmx:100810500 1237.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01524 08 45085583 45112067 Cca08g01524 08 45085583 45112067 ECH