Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01474 ATGTCTCAGGCTATAGTGAACTTCATTGTGCAAAGTCTTGGTGATTTGCTGATTCAAGAATCCGTGTACTTATATGGGGTGCAGGACAAAGTGTTGCAGCTGCAAACTGAATTGTGGAGGATGAGGTCTTACTTGCAAGATGCAGATAGGAGGCAAGATGAAAATGAAAGGCTCAGGAATTGGATTTCAGAAATCAGAGAAGCTGCTTATGATTCTGAAGATGTGATTGAATCTTATGCCCTCAGAGGAGCCTCAAGAAGAAATTTTTCAGGTGTGTTAAGCCTCATCAAAAGGTATGCTTTAATCATCAACCGGTTAATAGAGATCCACAAGGTGGGGTCTCATGTTGATAATGTCAAAGCTAGGATTTCTAGCCTTACAAGCAGCCTTGAAACTTACGGCATAAGAGCTGAGATAGAAGAAGCCTCAAATTCTATGCATGGGAGGCAGGGAGCTTTGAGGAGGTCTTACTCACATGTCATTGAAGAGGACATAATTGGTGTTGAAGATGATGTGAAGATTTTGGAGTCACGTATGGTGAACCCCGACAAAGTAGTAGCCATTTGTGGAATGGGGGGGTTAGGGAAAACAACATTGGCAAAGAAGGTGTACCATAGTCCTAATGTGAGGAACAATTTTGAGAGCTTGGCTTGGGCTTACATATCACAGCATTGCCAAGCAAGGGATGTGTGGGAAGGGATTTTGTTTAAGCTGATCTCTCCTTCCAATGAGGAAAGAGAGGAAATTGGGAATATGAGAGATGAGGAGGTTGCAAAGATGCTTTACAAAGTTCAAGTGGAGAAGAGGTGCTTAGTGGTCCTTGATGATATTTGGAGGACAGACACGTGGCACAAACTGAAGCCTGCGTTTCCTCATGGAAGATCAGTGTCAGTAGCTGGTAGCAAAATATTGCTAACTACTAGAAACAATGATGTTCCATTGCAGATGGATCCTGGTTGTTATCTTCACAAACCAAAATGTTTGAATGAAGATGACAGCTGGGAGTTGTTCCAAAAGAAGGCATTTCCAAAAGTTGTTGATCCAGACTACAGAGAAAAGGAGAAATTGGGAAGGGAAATGGTTGGAAGATGTGGAGGTTTACCATTGGCCATCATTGTGCTTGCAGGACTTTTAGCATCAAAGCCTACACTCTATGAATGGAACACTGTGCGTCAGAACATCAATTCATATTTGAGGAGAGCAAAAGGCCAAGAACAACACTTAGGAGTATCCGAGGTGTTGGCTTTAAGCTACTACGAATTGCCATACCAGTTGAAGCCATGCTTCCTACACTTAGCACATTTCCCAGAAAATTTAGAGATACCAACAAAGAAAATCGTAAGAATGTGGGTGGCAGAGGGTATTGTATCATTGGAACACAATGGAGAAGGTGAGGAAGTTCTTGAGGATGTTGGACAACGTTACTTGACTGAGCTAGTGGAGAGATGCATGATTCAGGTTGTTGAAAAGAGTTCAACGGGGAGAATAAGTACTTGCCAAATGCACAACCTCATGAGGGACCTATGTGTTTCTAAGGCATGTCAAGAAAACTTTCTTGTGGTGATTAATTCCAGGAATGAAGAAGAAACTAGAGGGCCATCAAGAGCTAGAACAATGAGAAAAGTTCGCAGGATTGCCTTGTATCTTGATCAGGATGTTGGTAGGTTCTTCCCTTCAAACTTGAAAAGCCTCTACCATCTAAGATCTCTCCTTTGCTACCATGAAAAGACAACTAGGATAAGTGAATGGGGGGTGATGAAGTCATTTTTCAACAAATGCAGGTTACTTAGAGTCTTGGACTTGGAAGGAATACAAGGTCCAGGAGGGAAGTTACCAAAAGAAATTGGATTCTTGATCCACTTAAGGTTTCTCAGTCTAAGAAATACAAAAATTGACGAGTTGCCCCTATCAATAGGAAATTTGAAGTACTTGATGACCCTTGATCTTCTAACAGGAAATTCAACTGTACTAATACCAAATGTCATAGGGAACATGCAGAAAATGAGACATTTATATTTACCAGAGTCTTGTGGTGATAGCATTGAAAGATGGCAACTGGACAACCTGAAAAACTTGCAGACCTTGGTTAACTTCCCTGCTGAGAAGTGTGGTGTAAGAGATCTCATGAAATTGACCAATTTAAGAAAATTGGTGATAGAAGATCCTAAATTTGGAGATATCTTCAGGTACCGTAATGTGACATTTAGCCACCTAGAGTCATTGTTTTTTGTTAGTTCTGAGGATATATCAATTACCGATGTTGCATTAGGGTGTCCTAATCTCTACAAGCTACACATGGAAGGACCTATAAAGAATTTTCCAGAGCCCCAACAATTTTTTTCCAAGCTTATGAAGCTAAAGTTAAAGGGTTCTGGACTTGTTGTAGATCCAATGCCAACATTAGAGAAGCTTCCCAATTTAAGGTTGCTTGAACTAAAACTTGATTCATTCATGGGCAAGAGGCTAGTTTGTTCCAGCAAAGGCTTCCCTCACCTCAAGTCTTTGCATATCTGCGACTTGCCAAATCTTGAAGAGTGGAAGTTGGATAAAGGAGCCATGCCTAGTCTTAGCAAACTTGAGATTGAACATTGCACCAAGCTTGAGAGGGTTCCAGATGGGCTCAGATTTGTCACCACTCTTCAGGATTTGGAGATCAGGTCAACGTTTGTAGCATTCAGAACTAAACTTGAAAAAGGGGGAGAGGATCATTACAAGGTCCAACATGTGCCAACTGTTGTATTTTGTCATTGTGACTATTAA 2760 0.4116 MSQAIVNFIVQSLGDLLIQESVYLYGVQDKVLQLQTELWRMRSYLQDADRRQDENERLRNWISEIREAAYDSEDVIESYALRGASRRNFSGVLSLIKRYALIINRLIEIHKVGSHVDNVKARISSLTSSLETYGIRAEIEEASNSMHGRQGALRRSYSHVIEEDIIGVEDDVKILESRMVNPDKVVAICGMGGLGKTTLAKKVYHSPNVRNNFESLAWAYISQHCQARDVWEGILFKLISPSNEEREEIGNMRDEEVAKMLYKVQVEKRCLVVLDDIWRTDTWHKLKPAFPHGRSVSVAGSKILLTTRNNDVPLQMDPGCYLHKPKCLNEDDSWELFQKKAFPKVVDPDYREKEKLGREMVGRCGGLPLAIIVLAGLLASKPTLYEWNTVRQNINSYLRRAKGQEQHLGVSEVLALSYYELPYQLKPCFLHLAHFPENLEIPTKKIVRMWVAEGIVSLEHNGEGEEVLEDVGQRYLTELVERCMIQVVEKSSTGRISTCQMHNLMRDLCVSKACQENFLVVINSRNEEETRGPSRARTMRKVRRIALYLDQDVGRFFPSNLKSLYHLRSLLCYHEKTTRISEWGVMKSFFNKCRLLRVLDLEGIQGPGGKLPKEIGFLIHLRFLSLRNTKIDELPLSIGNLKYLMTLDLLTGNSTVLIPNVIGNMQKMRHLYLPESCGDSIERWQLDNLKNLQTLVNFPAEKCGVRDLMKLTNLRKLVIEDPKFGDIFRYRNVTFSHLESLFFVSSEDISITDVALGCPNLYKLHMEGPIKNFPEPQQFFSKLMKLKLKGSGLVVDPMPTLEKLPNLRLLELKLDSFMGKRLVCSSKGFPHLKSLHICDLPNLEEWKLDKGAMPSLSKLEIEHCTKLERVPDGLRFVTTLQDLEIRSTFVAFRTKLEKGGEDHYKVQHVPTVVFCHCDY 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01474 919 Gene3D - 146 318 IPR027417 -
Cca08g01474 919 Gene3D - 327 416 IPR042197 -
Cca08g01474 919 PANTHER DISEASE RESISTANCE RPP8-LIKE PROTEIN 3-RELATED 3 888 - -
Cca08g01474 919 Pfam NB-ARC domain 179 418 IPR002182 GO:0043531
Cca08g01474 919 Gene3D - 5 113 - -
Cca08g01474 919 Gene3D - 417 514 IPR036388 -
Cca08g01474 919 Pfam Rx N-terminal domain 5 87 IPR041118 -
Cca08g01474 919 Gene3D Ribonuclease Inhibitor 528 899 IPR032675 -
Cca08g01474 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 432 IPR027417 -
Cca08g01474 919 PANTHER DISEASE RESISTANCE PROTEIN RP 3 888 IPR044974 GO:0006952
Cca08g01474 919 SUPERFAMILY L domain-like 500 887 - -
Cca08g01474 919 CDD RX-CC_like 4 128 IPR038005 -
Cca08g01474 919 PRINTS Disease resistance protein signature 185 200 - -
Cca08g01474 919 PRINTS Disease resistance protein signature 264 278 - -
Cca08g01474 919 PRINTS Disease resistance protein signature 364 378 - -
Cca08g01474 919 PRINTS Disease resistance protein signature 851 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01474 Cca-Chr8 43640149 43644199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01474 576 840 Receptor kinase-like Gene Family AT4G13820 30.000 1.19e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01474 - - gmx:100305356 1461.82