LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g01470	ATGAAAAGTATTGGGATTTTTATGGTGGTGGTAGCTACCTTTGTGGTGGCAACCACCGGTGGTAGCTTCTACCAAGACTTTGAAATAACATGGGGTGGTGATCGTGCCAAAGTCCTTGAAAATGGACAGGCTCTTACCCTCTCCTTGGACAAGGCCTCTGGCTCTGGCTTTCGTTCCAAACATGAGTACTTGTTCGGAAAAATTGACATGCAGCTCAAGCTTGTGCCTGGAAACTCTGCTGGCACTGTCACAGCCTATTATCTATCTTCTTTGGGACCTACTCATGACGAAATAGACTTCGAGTTCTTGGGCAACTTGAGTGGTGATCCTTACACTCTCCACACAAACGTGTTCACCCAAGGGAAAGGCAACAGAGAGCAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCACACATACTCCGTTCAATGGAACCCTGCAAGCATCatATTCTCTGTGGATGGGACCCCAATAAGGGAGTTCAAGAATTTGGAGATAAAAGGGGTTCCTTTCCCGAAGAACCAAGCCATGAGAATATACTCTAGTCTTTGGGACGCTGAGGATTGGGCCACGCGAGGTGGGCTTGTGAAAACAGATTGGACCAAGGCCCCATTCACGGCCTCATATAGGAACTTCAATGCGCAAGCGTGTGTTTGGGCCTCGTCAGGCTCGTCTTCTTGCTCTTCTTCCTCGGGCCAATCACTGGACGCCACGGGGCAGGCCAAGCTTCGTTGGGTGCAGAAGAACTACATGATCTATAACTACTGCACTGATATTAGACGTTTCCCACAAGGCCTACCTCCAGAATGTTCCTCTGCATGA	828	0.4903	MKSIGIFMVVVATFVVATTGGSFYQDFEITWGGDRAKVLENGQALTLSLDKASGSGFRSKHEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFTQGKGNREQQFHLWFDPTKDFHTYSVQWNPASIIFSVDGTPIREFKNLEIKGVPFPKNQAMRIYSSLWDAEDWATRGGLVKTDWTKAPFTASYRNFNAQACVWASSGSSSCSSSSGQSLDATGQAKLRWVQKNYMIYNYCTDIRRFPQGLPPECSSA	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g01470	275	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	8	273	IPR044791	GO:0004553
	Cca08g01470	275	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	230	272	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Cca08g01470	275	SUPERFAMILY	Concanavalin A-like lectins/glucanases	21	273	IPR013320	-
	Cca08g01470	275	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	97	107	IPR008263	GO:0004553\|GO:0005975
	Cca08g01470	275	PRINTS	Glycosyl hydrolase family 16 signature	55	73	IPR008264	GO:0004553\|GO:0005975
	Cca08g01470	275	PRINTS	Glycosyl hydrolase family 16 signature	113	126	IPR008264	GO:0004553\|GO:0005975
	Cca08g01470	275	PRINTS	Glycosyl hydrolase family 16 signature	131	148	IPR008264	GO:0004553\|GO:0005975
	Cca08g01470	275	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	8	273	-	-
	Cca08g01470	275	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	17	211	IPR000757	GO:0004553\|GO:0005975
	Cca08g01470	275	CDD	GH16_XET	20	272	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Cca08g01470	275	Gene3D	-	8	275	-	-
	Cca08g01470	275	PIRSF	EndGlu_transf	1	275	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Cca08g01470	275	Pfam	Glycosyl hydrolases family 16	24	204	IPR000757	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g01470	Cca-Chr8	43572692	43575282	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g01470	6	275	Glycoside Hydrolase	AT4G25810	70.609	1.49e-148	415

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g01470	K14504		K08235	gmx:732603	492.656

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g02463	11	51716881	51718858	Cca08g01470	08	43572692	43575282	PCT