Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01464 atggagaCTCCTCCGCAACAGGTGGTGAAGAAGAAGGAGACAAGGGGACGAAAACCGAAGCCCAAGGACGAGAAGAAAGAGGAACAACAACATGCGAAGGCTTTGAAGGAAGGGAGAAAAACGcagcaacagcaccaacaacaacaacaacaacCTTCGGTCGACGAAAAGTACACGCAGTGGAAGTCCCTTGTTCCTGTTCTCTACGATTGGCTCGCCAACCACAACCTCGTTTGGCCCTCTCTCTCTTGCAGGTGGGGCCCTCAGCTCGAACAAGCCACTTACAAGAATCGCCAGCGTCTCTACCTTTCCGAGCAGACTGATGGTAGCGTGCCGAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCGGCTGCAGAGCACATTTCTCAGTTTAATGAAGAGGCGCGATCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGCGAGGTTAACAGAATCAGGGAATTGCCACAAAATTCCAAGATAGTGGCTACACATACAGATAGCCCTGATGTTCTTGTTTGGGATGTTGAAAATCAACCTAACCGTCATGCTGTCCTTGGAGCCACAAACTCTCGTCCAGATCTGATATTGACTGGTCACCAAGATAATGCAGAATTCGCTCTTGCAATGTGCCCAACTGAGCCCTATGTTCTTTCAGGAGGTAAGGACAAAACGGTTGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCATCTGGAGGATCAATTATTAAACCAAACTCCAAATCTGGAGAAGGCAATGATAAAACTGTTGATGGCCCTTCTGTTGGACCACGAGGTATCTACTGTGGGCATGATGATACTGTTGAAGATGTGACTTTCTGCCCATCTAGTGCACAGGAATTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAAAAAGCTCATGATGCTGATCTTCACTGTGTTGACTGGAACCCCCATGATAATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCTTGTTTGATCGCCGCAATCTCACATCTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAAGATGGTCTCTTAAACATCTGGGACTATGAGAAGGTTGGTATAAAGATAGAGCGAGCTGGAAAATCAATAAGTTCTCCCCCAGGGTTGTTTTTCCAGCATGCAGGTCATAGAGATAAAGTAGTCGACTTCCATTGGAATGCATATGATCCATGGACTATTGTTAGTGTGTCTGATGACTGTGAAAGTACGGGTGGAGGGGGAACACTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAAATGAGGTTTTGGCCGAGTTGGAGAAATTCAAATCTCATGTGGTGGCGTGTGCTGCAAAGACCGAAAAATGA 1509 0.45 METPPQQVVKKKETRGRKPKPKDEKKEEQQHAKALKEGRKTQQQHQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAASGGSIIKPNSKSGEGNDKTVDGPSVGPRGIYCGHDDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHDADLHCVDWNPHDNNLILTGSADNSVRLFDRRNLTSNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGIKIERAGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPENEVLAELEKFKSHVVACAAKTEK 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01464 502 MobiDBLite consensus disorder prediction 1 40 - -
Cca08g01464 502 SUPERFAMILY WD40 repeat-like 143 497 IPR036322 GO:0005515
Cca08g01464 502 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 56 122 IPR022052 -
Cca08g01464 502 MobiDBLite consensus disorder prediction 41 56 - -
Cca08g01464 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 356 - -
Cca08g01464 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 407 IPR001680 GO:0005515
Cca08g01464 502 Pfam WD domain, G-beta repeat 203 238 IPR001680 GO:0005515
Cca08g01464 502 Pfam WD domain, G-beta repeat 366 405 IPR001680 GO:0005515
Cca08g01464 502 Pfam WD domain, G-beta repeat 276 311 IPR001680 GO:0005515
Cca08g01464 502 Pfam WD domain, G-beta repeat 324 356 IPR001680 GO:0005515
Cca08g01464 502 Gene3D - 31 488 IPR015943 GO:0005515
Cca08g01464 502 PANTHER WD40 REPEAT FAMILY 36 499 - -
Cca08g01464 502 MobiDBLite consensus disorder prediction 1 56 - -
Cca08g01464 502 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 36 499 - -
Cca08g01464 502 MobiDBLite consensus disorder prediction 249 264 - -
Cca08g01464 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 320 IPR001680 GO:0005515
Cca08g01464 502 MobiDBLite consensus disorder prediction 248 269 - -
Cca08g01464 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 356 IPR001680 GO:0005515
Cca08g01464 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 407 - -
Cca08g01464 502 SMART WD40_4 271 311 IPR001680 GO:0005515
Cca08g01464 502 SMART WD40_4 365 405 IPR001680 GO:0005515
Cca08g01464 502 SMART WD40_4 198 238 IPR001680 GO:0005515
Cca08g01464 502 SMART WD40_4 423 470 IPR001680 GO:0005515
Cca08g01464 502 SMART WD40_4 316 356 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01464 Cca-Chr8 43420892 43427908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01464 262 465 Miscellaneous Gene Families AT5G08390 26.291 1.69e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01464 K10752 - gmx:100779302 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01464 08 43420892 43427908 Cca08g01464 08 43420892 43427908 ECH