Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01436 ATGGTCGTGAGGATTCGGCTGTCCCGGTTCGGGTGTAAGAACAAGCCGTTCTATCGGGTTATGGCTGCTGATAGCAGATCCCCAAGAGATGGCAAGCACCTCGAAGTTCTTGGTTACTACAATCCTTTGCCAGGTCAAGATGGTGGCAAGAGAATGGGTCTCAACTTCGAAAGAGTCAAGTATTGGCTTTCTGTTGGAGCTCAGCCTTCGGAGCCGGTGGAGCGTCTTCTATTCCGGGCTGGTGTGCTGCCACCGCCGCCAATGGTGGCAATGGGGCGGAAAGGTGGACCACGTGATACTCTCCCTGTTGATGCACTAACTGGACGTGTCCTGAATCAAGAAAAGCCAGCTAATGCGAATAACAATGAGCATCAACATGACACTCCTGAAAACTCTTAG 399 0.5163 MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVERLLFRAGVLPPPPMVAMGRKGGPRDTLPVDALTGRVLNQEKPANANNNEHQHDTPENS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01436 132 PANTHER 30S RIBOSOMAL PROTEIN S16 1 114 IPR000307 GO:0003735|GO:0005840|GO:0006412
Cca08g01436 132 Gene3D - 1 131 IPR023803 -
Cca08g01436 132 TIGRFAM S16: ribosomal protein bS16 3 82 IPR000307 GO:0003735|GO:0005840|GO:0006412
Cca08g01436 132 Pfam Ribosomal protein S16 9 70 IPR000307 GO:0003735|GO:0005840|GO:0006412
Cca08g01436 132 MobiDBLite consensus disorder prediction 89 132 - -
Cca08g01436 132 PANTHER 30S RIBOSOMAL PROTEIN S16-LIKE 1 114 - -
Cca08g01436 132 Hamap 30S ribosomal protein S16 [rpsP]. 2 80 IPR000307 GO:0003735|GO:0005840|GO:0006412
Cca08g01436 132 SUPERFAMILY Ribosomal protein S16 3 94 IPR023803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01436 Cca-Chr8 42668647 42669345 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01436 K02959 - gmx:100305630 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01436 08 42668647 42669345 Cca08g01436 08 42668647 42669345 ECH