Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01424 ATGGAGTGCGTTGGAGCGAGGAACGTGGCGGCAATGGCGTTTTGCGTGAGTCCTGCGTCGAGGTTGAGGCTGCGGAGGAAGAAGCTCTGGAGGAGACGAGCCTCCTCCTCCTCGTCGTCGAGCGGCCACGGCGTTCGTTGCCGTTCGCGGTGGCTGAAGGTGGAGGCGAAGGCGGGGAGCGAGAGTTGCGTCGCGACCAAAGAGGACTTCGCCGATGAGGAGGATTACGTCAAGGCTGGTGGCTCCGAACTCGTTTTCGTCCAAATGCAGCAGAACAAAGCCATGGAAATGCAATCCAAGCTCGCGGATAAGTTACCACCTATCTCGATAGGAGATGATATACTGGATCTAGTTGTCATTGGTTGTGGTCCTGCTGGGCTTGCTCTGGCTGCTGAATCTGCCAAGTTAGGACTAAATGTTGGGCTTATTGGTCCAGATCGCCCTTTCACAAATAATTATGGTGTGTGGGAGGACGAATTTAAAGGTCTTGGACTTGAAGGTTGCATTGAGCATGTTTGGAAGGATACCGTTGTCTATCTTGACAATAAGGACCCCGTTTTAATTGGACGTTCCTATGGACGTGTCAGTCGGCATCTGCTTCATGAGGAATTGTTAAGAAGGTGTGTCGAGTCAGGTGTCTCGTATCTTAGCTCAAGAGTAGAAAGTATTGTTGAGGCTAGCAATGGTCTTAGTCATGTTGTCTGTGAATATGATATTGTAGTGCCCTGCAGGCTAGTTACTGTTGCATCAGGAGCCGCTTCAGGGAAACTGTTACAATATGAGGTCGGGGGTCCAAAGGTGTCTGTCCAAACAGCTTATGGTTTGGAAGTTGAGGTGGAAAACAATCCTTATGATCCAAATTTGATGGTTTTCATGGATTACAGAGACTACATGAAGCAAAATGTTCAATGTCCAGAAGCAAATTATCCAACATTTCTTTATGTAATGCCCATGTCTCGTACAAGAGTGTTCTATGAGGAAACCTGTTTAGCGTCAAAAGATGCGATGCCTTTTGATTTACTAAAGAAAAAGCTCTTTTCAAGATTAAATACAATGGGGATCAGGATTGCAAAAATTTATGAAGAGGAATGGTCTTATATCCCAGTTGGTGGATCCTTGCCAAACACTGGACAAAAGAACCTTGCATTTGGTGCAGCTGCTAGCATGGTGCATCCAGCCACAGGCTACTCCGTTGTGAGATCTTTATCAGAAGCTCCAAAATATGCTTCAGTAATTGCAACTATTTTGAAAGATGGCCATGCCAAGGACGTTTTTTCTCTTGAAAGAAGAAAGGAGAATCTATCTATGCAAGCTTGGGATACACTTTGGCCACAAGAAAGGAAACGGCAGAGAGCATTCTTTCTTTTTGGTTTAGCTCTAATTCTGCAGCTGGACATTGAGGGCATTAGAACATTCTTTCGTACTTTCTTCTGCTTACCTGATTGGATGTGGAAGGGATTTCTTGGCTCCTCTCTCTCATCTACAGATCTTGTATTATTTGCATTCTACATGTTCATAATAGCACCAAATAACTTGAGAATGAGTCTAGTCAAACATCTGCTTTCAGATCCTACTGGTGCAACTATGATAAAAACTTACTTAACGATATAG 1611 0.4488 MECVGARNVAAMAFCVSPASRLRLRRKKLWRRRASSSSSSSGHGVRCRSRWLKVEAKAGSESCVATKEDFADEEDYVKAGGSELVFVQMQQNKAMEMQSKLADKLPPISIGDDILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDRPFTNNYGVWEDEFKGLGLEGCIEHVWKDTVVYLDNKDPVLIGRSYGRVSRHLLHEELLRRCVESGVSYLSSRVESIVEASNGLSHVVCEYDIVVPCRLVTVASGAASGKLLQYEVGGPKVSVQTAYGLEVEVENNPYDPNLMVFMDYRDYMKQNVQCPEANYPTFLYVMPMSRTRVFYEETCLASKDAMPFDLLKKKLFSRLNTMGIRIAKIYEEEWSYIPVGGSLPNTGQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIATILKDGHAKDVFSLERRKENLSMQAWDTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFCLPDWMWKGFLGSSLSSTDLVLFAFYMFIIAPNNLRMSLVKHLLSDPTGATMIKTYLTI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01424 536 PANTHER LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC ISOFORM X1 5 495 - -
Cca08g01424 536 TIGRFAM carotene-cycl: lycopene cyclase family protein 116 516 IPR010108 GO:0016117|GO:0016705
Cca08g01424 536 PRINTS Pyridine nucleotide disulphide reductase class-I signature 116 138 - -
Cca08g01424 536 PRINTS Pyridine nucleotide disulphide reductase class-I signature 246 255 - -
Cca08g01424 536 SUPERFAMILY FAD/NAD(P)-binding domain 113 509 IPR036188 -
Cca08g01424 536 Gene3D - 115 475 IPR036188 -
Cca08g01424 536 PANTHER - 5 495 - -
Cca08g01424 536 Pfam Lycopene cyclase protein 116 513 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01424 K06444 - gmx:100788180 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01424 08 42475807 42485793 Cca08g01424 08 42475807 42485793 ECH